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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824136
Gene symbol: Cxcr4
Gene name: C-X-C motif chemokine receptor 4
Probe: IMAGE clone 2654812
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006007_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_006007_02
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006007_02
Specimen euxassay_006007_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_006007_03
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_03
Specimen euxassay_006007_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_006007_04
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_04
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_04
Specimen euxassay_006007_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_05
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_05
TS23: pons ventricular layer Moderate Uniform euxassay_006007_05
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_05
TS23: hippocampus Present euxassay_006007_05
Specimen euxassay_006007_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_06
TS23: pons ventricular layer Moderate Uniform euxassay_006007_06
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_06
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_06
TS23: hippocampus Present euxassay_006007_06
Specimen euxassay_006007_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_006007_07
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_07
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_07
TS23: pons ventricular layer Moderate Uniform euxassay_006007_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_07
TS23: hippocampus Present euxassay_006007_07
Specimen euxassay_006007_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_006007_08
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006007_08
TS23: cervical ganglion Weak Regionally restricted euxassay_006007_08
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_08
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_08
TS23: pons ventricular layer Moderate Uniform euxassay_006007_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_08
TS23: hippocampus Present euxassay_006007_08
Specimen euxassay_006007_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_006007_09
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006007_09
TS23: cervical ganglion Weak Regionally restricted euxassay_006007_09
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_09
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_09
TS23: pons ventricular layer Moderate Uniform euxassay_006007_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_09
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006007_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_09
TS23: hippocampus Present euxassay_006007_09
TS23: mitral valve Moderate Regionally restricted euxassay_006007_09
Specimen euxassay_006007_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_006007_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_10
TS23: thymus primordium Moderate Regionally restricted euxassay_006007_10
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_10
TS23: pons ventricular layer Moderate Uniform euxassay_006007_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_10
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006007_10
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_006007_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_10
TS23: hippocampus Present euxassay_006007_10
TS23: mitral valve Strong Regionally restricted euxassay_006007_10
Specimen euxassay_006007_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_11
TS23: thymus primordium Moderate Regionally restricted euxassay_006007_11
TS23: pons ventricular layer Moderate Uniform euxassay_006007_11
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_11
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006007_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_006007_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_006007_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_11
TS23: hippocampus Present euxassay_006007_11
Specimen euxassay_006007_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006007_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006007_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_12
TS23: thymus primordium Moderate Regionally restricted euxassay_006007_12
TS23: pons ventricular layer Moderate Uniform euxassay_006007_12
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_12
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_006007_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_006007_12
Specimen euxassay_006007_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006007_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006007_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_13
TS23: thymus primordium Moderate Regionally restricted euxassay_006007_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_006007_13
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_13
TS23: pons ventricular layer Moderate Uniform euxassay_006007_13
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_006007_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_006007_13
TS23: mitral valve Strong Regionally restricted euxassay_006007_13
Specimen euxassay_006007_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_006007_14
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006007_14
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_14
TS23: pons ventricular layer Moderate Uniform euxassay_006007_14
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006007_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_006007_14
Specimen euxassay_006007_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_15
TS23: cervical ganglion Moderate Regionally restricted euxassay_006007_15
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006007_15
TS23: pons ventricular layer Moderate Uniform euxassay_006007_15
TS23: midbrain ventricular layer Moderate Uniform euxassay_006007_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_15
TS23: hippocampus Present euxassay_006007_15
Specimen euxassay_006007_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006007_16
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006007_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_16
TS23: rest of cerebellum ventricular layer Weak Uniform euxassay_006007_16
TS23: pons ventricular layer Weak Uniform euxassay_006007_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_16
TS23: hippocampus Present euxassay_006007_16
Specimen euxassay_006007_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006007_17
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006007_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_006007_17
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006007_17
TS23: pons ventricular layer Strong Uniform euxassay_006007_17
Specimen euxassay_006007_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006007_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_18
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006007_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006007_18
TS23: hippocampus Present euxassay_006007_18
Specimen euxassay_006007_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_006007_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_006007_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006007_19
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_19
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006007_19
Specimen euxassay_006007_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_006007_20
TS23: lower jaw molar Moderate Regionally restricted euxassay_006007_20
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_20
Specimen euxassay_006007_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Regionally restricted euxassay_006007_21
Specimen euxassay_006007_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_006007_22
Specimen euxassay_006007_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_006007_23
TS23: vibrissa Moderate Regionally restricted euxassay_006007_23
Specimen euxassay_006007_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_006007_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory