About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824120
Gene symbol: Ctxn1
Gene name: cortexin 1
Probe: T31289
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012409_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012409_01
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_01
Specimen euxassay_012409_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012409_02
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_02
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_02
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_02
TS23: stomach Weak Regionally restricted euxassay_012409_02
Specimen euxassay_012409_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012409_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_03
TS23: facial ganglion Strong Regionally restricted euxassay_012409_03
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_03
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_03
TS23: stomach Weak Regionally restricted euxassay_012409_03
Specimen euxassay_012409_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_04
TS23: facial ganglion Moderate Regionally restricted euxassay_012409_04
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_04
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_04
TS23: stomach Weak Regionally restricted euxassay_012409_04
Specimen euxassay_012409_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012409_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_05
TS23: facial ganglion Strong Regionally restricted euxassay_012409_05
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_012409_05
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_05
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_05
TS23: stomach Weak Regionally restricted euxassay_012409_05
Specimen euxassay_012409_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_06
TS23: facial ganglion Strong Regionally restricted euxassay_012409_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012409_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_012409_06
TS23: dorsal root ganglion Strong Regionally restricted euxassay_012409_06
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_06
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_012409_06
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012409_06
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012409_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_06
TS23: stomach Weak Regionally restricted euxassay_012409_06
TS23: midgut Weak Regionally restricted euxassay_012409_06
Specimen euxassay_012409_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_012409_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012409_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_012409_07
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012409_07
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012409_07
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012409_07
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012409_07
TS23: pons mantle layer Weak Regionally restricted euxassay_012409_07 trigeminal motor nucleus
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_07
TS23: stomach Weak Regionally restricted euxassay_012409_07
TS23: midgut Weak Regionally restricted euxassay_012409_07
Specimen euxassay_012409_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_012409_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012409_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012409_08
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012409_08
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012409_08
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012409_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012409_08 facial motor nucleus
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_08
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012409_08
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_012409_08
Specimen euxassay_012409_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012409_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_012409_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_012409_09
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_09
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012409_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_09
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_09
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_09
Specimen euxassay_012409_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_012409_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_012409_10
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_10
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012409_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_10
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_10
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_10
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_012409_10
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012409_10
Specimen euxassay_012409_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_012409_11
TS23: vomeronasal organ Strong Regionally restricted euxassay_012409_11
TS23: ventral grey horn Weak Regionally restricted euxassay_012409_11
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_11
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_012409_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_11
Specimen euxassay_012409_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_012409_12
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_012409_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_12
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_12
Specimen euxassay_012409_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_012409_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_012409_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_012409_13
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_012409_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_13
Specimen euxassay_012409_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_012409_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_012409_14
TS23: vomeronasal organ Strong Regionally restricted euxassay_012409_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_14
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_012409_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_14
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012409_14 facial motor nucleus
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_14
Specimen euxassay_012409_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_012409_15
TS23: vagus ganglion Moderate Regionally restricted euxassay_012409_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_012409_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012409_15
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_15
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_012409_15
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012409_15
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012409_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012409_15 facial motor nucleus
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_012409_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012409_15
Specimen euxassay_012409_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_012409_16
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012409_16
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012409_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012409_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012409_16
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_012409_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012409_16
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012409_16
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012409_16
TS23: pons mantle layer Weak Regionally restricted euxassay_012409_16 trigeminal motor nucleus
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012409_16
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_012409_16
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_16
Specimen euxassay_012409_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_012409_17
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_012409_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_012409_17
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_012409_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_17
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_012409_17
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_17
Specimen euxassay_012409_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_18
TS23: facial ganglion Strong Regionally restricted euxassay_012409_18
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012409_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_18
Specimen euxassay_012409_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_19
TS23: facial ganglion Strong Regionally restricted euxassay_012409_19
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_19
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012409_19
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012409_19
Specimen euxassay_012409_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012409_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_012409_20
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_20
Specimen euxassay_012409_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_012409_21
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_012409_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012409_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory