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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824092
Gene symbol: Cst3
Gene name: cystatin C
Probe: MGC clone 6210
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004853_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_02
Specimen euxassay_004853_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_03
Specimen euxassay_004853_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_04
Specimen euxassay_004853_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_05
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_05
Specimen euxassay_004853_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_06
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_06
Specimen euxassay_004853_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_07
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_004853_07 trigeminal motor nucleus
Specimen euxassay_004853_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004853_08 facial motor nucleus
Specimen euxassay_004853_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_09
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_004853_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004853_09 facial motor nucleus
Specimen euxassay_004853_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_10
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_004853_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_10
Specimen euxassay_004853_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_11
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_004853_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004853_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004853_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_11
Specimen euxassay_004853_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_004853_12
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_12
Specimen euxassay_004853_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004853_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004853_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004853_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_004853_13
Specimen euxassay_004853_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004853_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004853_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004853_14
Specimen euxassay_004853_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004853_15 facial motor nucleus
Specimen euxassay_004853_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_004853_16
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004853_16 facial motor nucleus
Specimen euxassay_004853_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_004853_17
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004853_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_004853_17 trigeminal motor nucleus
Specimen euxassay_004853_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_004853_18
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_004853_18 trigeminal motor nucleus
Specimen euxassay_004853_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_19
Specimen euxassay_004853_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_20
Specimen euxassay_004853_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_21
Specimen euxassay_004853_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_004853_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory