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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824036
Gene symbol: Cpt1a
Gene name: carnitine palmitoyltransferase 1a, liver
Probe: MGC clone 65581
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006985_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_006985_01
Specimen euxassay_006985_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_006985_02
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_02
Specimen euxassay_006985_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_006985_03
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006985_03
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_03
Specimen euxassay_006985_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_04
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006985_04
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006985_04
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_04
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_04
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_04
Specimen euxassay_006985_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_05
TS23: rest of cerebellum ventricular layer Moderate Uniform euxassay_006985_05
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006985_05
TS23: vibrissa Weak Regionally restricted euxassay_006985_05
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_05
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_05
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_05
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_05
Specimen euxassay_006985_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006985_06
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_06
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_06
TS23: vibrissa Weak Regionally restricted euxassay_006985_06
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_06
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_06
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_06
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_06
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_06
Specimen euxassay_006985_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006985_07
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_07
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_07
TS23: pons mantle layer Strong Regionally restricted euxassay_006985_07 trigeminal motor nucleus
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_07
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_07
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_07
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_07
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_07
Specimen euxassay_006985_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_006985_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_08
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_08
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_08
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_08
TS23: adrenal gland Weak Regionally restricted euxassay_006985_08
TS23: metanephros Weak Regionally restricted euxassay_006985_08
TS23: midgut Weak Regionally restricted euxassay_006985_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006985_08 facial motor nucleus
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_08
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_08
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_08
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_08
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_08
Specimen euxassay_006985_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_09
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_09
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_09
TS23: pancreas Moderate Regionally restricted euxassay_006985_09
TS23: adrenal gland Weak Regionally restricted euxassay_006985_09
TS23: metanephros Weak Regionally restricted euxassay_006985_09
TS23: midgut Weak Regionally restricted euxassay_006985_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006985_09 facial motor nucleus
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_09
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_09
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_09
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_09
Specimen euxassay_006985_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_10
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006985_10
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_10
TS23: ventral grey horn Strong Regionally restricted euxassay_006985_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_10
TS23: pancreas Moderate Regionally restricted euxassay_006985_10
TS23: adrenal gland Weak Regionally restricted euxassay_006985_10
TS23: metanephros Weak Regionally restricted euxassay_006985_10
TS23: midgut Weak Regionally restricted euxassay_006985_10
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_10
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_10
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_10
Specimen euxassay_006985_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_11
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_11
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006985_11
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_11
TS23: pancreas Moderate Regionally restricted euxassay_006985_11
TS23: thymus primordium Weak Regionally restricted euxassay_006985_11
TS23: midgut Weak Regionally restricted euxassay_006985_11
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_11
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_11
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_11
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_11
Specimen euxassay_006985_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_12
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006985_12
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_12
TS23: intermediate grey horn Strong Regionally restricted euxassay_006985_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_12
TS23: thymus primordium Weak Regionally restricted euxassay_006985_12
TS23: midgut Weak Regionally restricted euxassay_006985_12
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_12
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_12
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_12
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_12
Specimen euxassay_006985_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_13
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006985_13
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_13
TS23: intermediate grey horn Strong Regionally restricted euxassay_006985_13
TS23: ventral grey horn Strong Regionally restricted euxassay_006985_13
TS23: thymus primordium Weak Regionally restricted euxassay_006985_13
TS23: midgut Weak Regionally restricted euxassay_006985_13
TS23: bladder Weak Regionally restricted euxassay_006985_13
TS23: urethra Weak Regionally restricted euxassay_006985_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_13
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_13
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_13
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_13
Specimen euxassay_006985_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_14
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_14
TS23: intermediate grey horn Strong Regionally restricted euxassay_006985_14
TS23: ventral grey horn Strong Regionally restricted euxassay_006985_14
TS23: thymus primordium Weak Regionally restricted euxassay_006985_14
TS23: midgut Weak Regionally restricted euxassay_006985_14
TS23: hindgut Weak Regionally restricted euxassay_006985_14
TS23: bladder Weak Regionally restricted euxassay_006985_14
TS23: urethra Weak Regionally restricted euxassay_006985_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_14
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_14
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_14
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_14
Specimen euxassay_006985_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_15
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_15
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_15
TS23: ventral grey horn Strong Regionally restricted euxassay_006985_15
TS23: midgut Weak Regionally restricted euxassay_006985_15
TS23: hindgut Weak Regionally restricted euxassay_006985_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006985_15 facial motor nucleus
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_15
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_15
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_15
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_15
Specimen euxassay_006985_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_16
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_16
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_16
TS23: medulla oblongata basal plate ventricular layer Strong Uniform euxassay_006985_16
TS23: ventral grey horn Strong Regionally restricted euxassay_006985_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_16
TS23: midgut Weak Regionally restricted euxassay_006985_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006985_16 facial motor nucleus
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_16
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_16
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_16
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_16
Specimen euxassay_006985_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_006985_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_17
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006985_17
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_17
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006985_17
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_006985_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006985_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006985_17
TS23: adrenal gland Weak Regionally restricted euxassay_006985_17
TS23: midgut Weak Regionally restricted euxassay_006985_17
TS23: pons mantle layer Strong Regionally restricted euxassay_006985_17 trigeminal motor nucleus
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_17
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_17
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_17
TS23: diencephalon meninges Moderate Regionally restricted euxassay_006985_17
Specimen euxassay_006985_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006985_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_18
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_18
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_18
TS23: adrenal gland Weak Regionally restricted euxassay_006985_18
TS23: metanephros Weak Regionally restricted euxassay_006985_18
TS23: midgut Weak Regionally restricted euxassay_006985_18
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_18
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_006985_18
TS23: midbrain meninges Moderate Regionally restricted euxassay_006985_18
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_18
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_18
Specimen euxassay_006985_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_19
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_19
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_19
TS23: adrenal gland Weak Regionally restricted euxassay_006985_19
TS23: metanephros Weak Regionally restricted euxassay_006985_19
TS23: midgut Weak Regionally restricted euxassay_006985_19
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_19
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_19
Specimen euxassay_006985_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_20
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_20
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_20
TS23: vibrissa Weak Regionally restricted euxassay_006985_20
TS23: metanephros Weak Regionally restricted euxassay_006985_20
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_20
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_20
Specimen euxassay_006985_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006985_21
TS23: telencephalon ventricular layer Strong Uniform euxassay_006985_21
TS23: rest of cerebellum ventricular layer Strong Uniform euxassay_006985_21
TS23: vibrissa Weak Regionally restricted euxassay_006985_21
TS23: medulla oblongata part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_006985_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_006985_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_21
Specimen euxassay_006985_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_006985_22
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006985_22
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_22
Specimen euxassay_006985_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_006985_23
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory