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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823992
Gene symbol: Col4a5
Gene name: collagen, type IV, alpha 5
Probe: T63117
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_015894_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lens Strong Regionally restricted euxassay_015894_01
TS23: stomach Weak Regionally restricted euxassay_015894_01
Specimen euxassay_015894_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_015894_02
TS23: telencephalon meninges Weak Regionally restricted euxassay_015894_02
Specimen euxassay_015894_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_03
TS23: stomach Weak Regionally restricted euxassay_015894_03
TS23: telencephalon meninges Weak Regionally restricted euxassay_015894_03
TS23: hindbrain meninges Weak Regionally restricted euxassay_015894_03
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_03
Specimen euxassay_015894_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_04
TS23: stomach Weak Regionally restricted euxassay_015894_04
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_04
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_015894_04
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_04
Specimen euxassay_015894_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_05
TS23: stomach Weak Regionally restricted euxassay_015894_05
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_05
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_015894_05
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_05
Specimen euxassay_015894_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_06
TS23: stomach Weak Regionally restricted euxassay_015894_06
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_06
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_06
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_015894_06
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_06
Specimen euxassay_015894_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_07
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_07
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_07
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_015894_07
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_07
TS23: nephric duct of male Weak Regionally restricted euxassay_015894_07
Specimen euxassay_015894_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_08
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_08
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_08
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_08
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_015894_08
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_08
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_08
Specimen euxassay_015894_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_09
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_09
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_09
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_09
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_09
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_09
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_015894_09
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_09
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_09
Specimen euxassay_015894_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_10
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_10
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_10
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_10
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_10
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_10
TS23: sublingual gland primordium Strong Regionally restricted euxassay_015894_10
TS23: thyroid gland Moderate Regionally restricted euxassay_015894_10
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_10
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_10
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_015894_10
TS23: umbilical artery extraembryonic part Moderate Regionally restricted euxassay_015894_10
Specimen euxassay_015894_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_11
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_11
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_11
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_11
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_11
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_11
TS23: thyroid gland Moderate Regionally restricted euxassay_015894_11
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_11
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_11
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_11
TS23: spinal cord floor plate Weak Regionally restricted euxassay_015894_11
TS23: bladder Weak Regionally restricted euxassay_015894_11
TS23: umbilical vein extraembryonic part Moderate Regionally restricted euxassay_015894_11
TS23: umbilical artery extraembryonic part Moderate Regionally restricted euxassay_015894_11
Specimen euxassay_015894_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_12
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_12
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_12
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_12
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_12
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_015894_12
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_015894_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_015894_12
TS23: spinal cord floor plate Weak Regionally restricted euxassay_015894_12
TS23: bladder Weak Regionally restricted euxassay_015894_12
TS23: urethra Weak Regionally restricted euxassay_015894_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: umbilical vein extraembryonic part Moderate Regionally restricted euxassay_015894_12
Specimen euxassay_015894_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_13
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_13
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_13
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_13
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_13
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_13
TS23: midbrain floor plate Moderate Regionally restricted euxassay_015894_13
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_015894_13
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_015894_13
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_015894_13
TS23: bladder Weak Regionally restricted euxassay_015894_13
TS23: urethra Weak Regionally restricted euxassay_015894_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: umbilical vein extraembryonic part Moderate Regionally restricted euxassay_015894_13
Specimen euxassay_015894_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_14
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_14
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_14
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_14
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_14
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_14
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_14
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_14
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_015894_14
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_015894_14
TS23: umbilical vein extraembryonic part Moderate Regionally restricted euxassay_015894_14
Specimen euxassay_015894_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_15
TS23: spinal cord meninges Strong Regionally restricted euxassay_015894_15
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_15
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_15
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_15
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_15
TS23: thyroid gland Moderate Regionally restricted euxassay_015894_15
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_15
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_15
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_15
TS23: umbilical vein extraembryonic part Moderate Regionally restricted euxassay_015894_15
Specimen euxassay_015894_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_16
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_16
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_16
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_16
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_015894_16
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_015894_16
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_16
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_16
Specimen euxassay_015894_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_17
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_17
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_17
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_17
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_015894_17
TS23: pons ventricular layer Weak Regionally restricted euxassay_015894_17
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_17
TS23: nephric duct of male Weak Regionally restricted euxassay_015894_17
Specimen euxassay_015894_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_18
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_18
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_18
TS23: diencephalon meninges Strong Regionally restricted euxassay_015894_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_015894_18
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_18
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_18
Specimen euxassay_015894_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_19
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_19
TS23: midbrain meninges Strong Regionally restricted euxassay_015894_19
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_19
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_19
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_19
Specimen euxassay_015894_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_20
TS23: hindbrain meninges Strong Regionally restricted euxassay_015894_20
TS23: telencephalon meninges Strong Regionally restricted euxassay_015894_20
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_015894_20
TS23: nephric duct of male Moderate Regionally restricted euxassay_015894_20
Specimen euxassay_015894_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_015894_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_015894_21
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_015894_21
Specimen euxassay_015894_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_015894_22
TS23: telencephalon meninges Moderate Regionally restricted euxassay_015894_22
Specimen euxassay_015894_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Weak Regionally restricted euxassay_015894_23
Specimen euxassay_015894_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Weak Regionally restricted euxassay_015894_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory