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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823988
Gene symbol: Col27a1
Gene name: collagen, type XXVII, alpha 1
Probe: T45429
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016233_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_01
TS23: tibia Strong Regionally restricted euxassay_016233_01
TS23: fibula Strong Regionally restricted euxassay_016233_01
TS23: femur Strong Regionally restricted euxassay_016233_01
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_016233_01
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_016233_01
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_016233_01
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_01
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_01
Specimen euxassay_016233_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_02
TS23: foot mesenchyme Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_016233_02
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_016233_02
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_016233_02
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_016233_02
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_016233_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_02
TS23: temporal bone Strong Regionally restricted euxassay_016233_02
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_02
Specimen euxassay_016233_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_03
TS23: lung Strong Regionally restricted euxassay_016233_03
TS23: foot mesenchyme Strong Regionally restricted euxassay_016233_03
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_016233_03
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_016233_03
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_016233_03
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_016233_03
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_016233_03
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_03
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_03
TS23: forelimb digit 1 phalanx Moderate Regionally restricted euxassay_016233_03
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_03
TS23: temporal bone Strong Regionally restricted euxassay_016233_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_03
Specimen euxassay_016233_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_04
TS23: lung Strong Regionally restricted euxassay_016233_04
TS23: vibrissa Moderate Regionally restricted euxassay_016233_04
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_016233_04
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_016233_04
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_016233_04
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_016233_04
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_04
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_04
TS23: forelimb digit 1 phalanx Moderate Regionally restricted euxassay_016233_04
TS23: temporal bone Strong Regionally restricted euxassay_016233_04
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_04
Specimen euxassay_016233_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_05
TS23: lung Strong Regionally restricted euxassay_016233_05
TS23: vibrissa Moderate Regionally restricted euxassay_016233_05
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_05
TS23: temporal bone Strong Regionally restricted euxassay_016233_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_05
Specimen euxassay_016233_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_06
TS23: lung Strong Regionally restricted euxassay_016233_06
TS23: vibrissa Moderate Regionally restricted euxassay_016233_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_06
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_06
TS23: temporal bone Strong Regionally restricted euxassay_016233_06
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_06
Specimen euxassay_016233_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_07
TS23: lung Strong Regionally restricted euxassay_016233_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_07
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_07
TS23: clavicle Weak Regionally restricted euxassay_016233_07
Specimen euxassay_016233_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_08
TS23: lung Strong Regionally restricted euxassay_016233_08
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_08
TS23: clavicle Strong Regionally restricted euxassay_016233_08
TS23: otic capsule Strong Regionally restricted euxassay_016233_08
Specimen euxassay_016233_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_09
TS23: lung Strong Regionally restricted euxassay_016233_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_09
TS23: clavicle Strong Regionally restricted euxassay_016233_09
TS23: otic capsule Strong Regionally restricted euxassay_016233_09
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_016233_09
TS23: nasal septum Strong Regionally restricted euxassay_016233_09
Specimen euxassay_016233_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_10
TS23: axial skeleton Strong Regionally restricted euxassay_016233_10
TS23: lung Moderate Regionally restricted euxassay_016233_10
TS23: otic capsule Strong Regionally restricted euxassay_016233_10
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_016233_10
TS23: cricoid cartilage Moderate Regionally restricted euxassay_016233_10
TS23: hyoid Moderate Regionally restricted euxassay_016233_10
TS23: nasal septum Strong Regionally restricted euxassay_016233_10
Specimen euxassay_016233_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_016233_11
TS23: lung Moderate Regionally restricted euxassay_016233_11
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_11
TS23: thyroid cartilage Moderate Regionally restricted euxassay_016233_11
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_016233_11
TS23: nasal septum Strong Regionally restricted euxassay_016233_11
Specimen euxassay_016233_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_016233_12
TS23: sternum Strong Regionally restricted euxassay_016233_12
TS23: lung Moderate Regionally restricted euxassay_016233_12
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_12
TS23: thyroid cartilage Weak Regionally restricted euxassay_016233_12
TS23: cricoid cartilage Weak Regionally restricted euxassay_016233_12
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_016233_12
TS23: nasal septum Strong Regionally restricted euxassay_016233_12
Specimen euxassay_016233_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_13
TS23: axial skeleton Strong Regionally restricted euxassay_016233_13
TS23: axial skeleton tail region Strong Regionally restricted euxassay_016233_13
TS23: lung Strong Regionally restricted euxassay_016233_13
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_13
TS23: thyroid cartilage Strong Regionally restricted euxassay_016233_13
TS23: trachea Strong Regionally restricted euxassay_016233_13
TS23: Meckel's cartilage Strong Regionally restricted euxassay_016233_13
TS23: nasal septum Strong Regionally restricted euxassay_016233_13
Specimen euxassay_016233_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_016233_14
TS23: rib Strong Regionally restricted euxassay_016233_14
TS23: axial skeleton Strong Regionally restricted euxassay_016233_14
TS23: lung Strong Regionally restricted euxassay_016233_14
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_14
TS23: thyroid cartilage Strong Regionally restricted euxassay_016233_14
TS23: cricoid cartilage Strong Regionally restricted euxassay_016233_14
TS23: Meckel's cartilage Strong Regionally restricted euxassay_016233_14
TS23: nasal septum Strong Regionally restricted euxassay_016233_14
Specimen euxassay_016233_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_016233_15
TS23: rib Strong Regionally restricted euxassay_016233_15
TS23: lung Strong Regionally restricted euxassay_016233_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_15
TS23: clavicle Strong Regionally restricted euxassay_016233_15
TS23: cricoid cartilage Strong Regionally restricted euxassay_016233_15
TS23: hyoid Moderate Regionally restricted euxassay_016233_15
Specimen euxassay_016233_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_016233_16
TS23: rib Strong Regionally restricted euxassay_016233_16
TS23: lung Strong Regionally restricted euxassay_016233_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_16
TS23: clavicle Strong Regionally restricted euxassay_016233_16
TS23: otic capsule Strong Regionally restricted euxassay_016233_16
TS23: hyoid Moderate Regionally restricted euxassay_016233_16
Specimen euxassay_016233_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_17
TS23: lung Strong Regionally restricted euxassay_016233_17
TS23: vibrissa Moderate Regionally restricted euxassay_016233_17
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_016233_17
TS23: otic capsule Strong Regionally restricted euxassay_016233_17
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_016233_17
Specimen euxassay_016233_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_18
TS23: lung Strong Regionally restricted euxassay_016233_18
TS23: vibrissa Moderate Regionally restricted euxassay_016233_18
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_18
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_18
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_016233_18
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_016233_18
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_18
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_016233_18
Specimen euxassay_016233_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_19
TS23: lung Strong Regionally restricted euxassay_016233_19
TS23: vibrissa Moderate Regionally restricted euxassay_016233_19
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_016233_19
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_016233_19
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_016233_19
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_016233_19
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_016233_19
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_19
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_19
TS23: temporal bone Strong Regionally restricted euxassay_016233_19
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_19
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_016233_19
Specimen euxassay_016233_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_016233_20
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_016233_20
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_20
TS23: temporal bone Strong Regionally restricted euxassay_016233_20
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_20
Specimen euxassay_016233_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_21
TS23: lung Strong Regionally restricted euxassay_016233_21
TS23: foot mesenchyme Strong Regionally restricted euxassay_016233_21
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_016233_21
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_016233_21
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_21
TS23: temporal bone Strong Regionally restricted euxassay_016233_21
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_21
Specimen euxassay_016233_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_22
TS23: tibia Moderate Regionally restricted euxassay_016233_22
TS23: fibula Moderate Regionally restricted euxassay_016233_22
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016233_22
TS23: temporal bone Strong Regionally restricted euxassay_016233_22
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_22
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_22
Specimen euxassay_016233_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_23
TS23: femur Strong Regionally restricted euxassay_016233_23
TS23: tibia Moderate Regionally restricted euxassay_016233_23
TS23: fibula Moderate Regionally restricted euxassay_016233_23
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016233_23
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_23
TS23: temporal bone Strong Regionally restricted euxassay_016233_23
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_23
Specimen euxassay_016233_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_016233_24
TS23: femur Strong Regionally restricted euxassay_016233_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016233_24
TS23: orbito-sphenoid Strong Regionally restricted euxassay_016233_24
TS23: exoccipital bone Strong Regionally restricted euxassay_016233_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory