About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823975
Gene symbol: Col13a1
Gene name: collagen, type XIII, alpha 1
Probe: MGC clone 36116
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003080_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_04
Specimen euxassay_003080_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_05
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_05
Specimen euxassay_003080_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_06
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_06
Specimen euxassay_003080_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_07
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_07
TS23: vibrissa Moderate Regionally restricted euxassay_003080_07
TS23: diaphragm Weak Regionally restricted euxassay_003080_07
Specimen euxassay_003080_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_08
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_08
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_08
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_08
TS23: vibrissa Moderate Regionally restricted euxassay_003080_08
TS23: diaphragm Weak Regionally restricted euxassay_003080_08
Specimen euxassay_003080_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_09
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_09
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_09
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_09
TS23: diaphragm Weak Regionally restricted euxassay_003080_09
Specimen euxassay_003080_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_10
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_10
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_10
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_10
TS23: vibrissa Moderate Regionally restricted euxassay_003080_10
TS23: diaphragm Moderate Regionally restricted euxassay_003080_10
Specimen euxassay_003080_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_11
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_11
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_11
TS23: vibrissa Moderate Regionally restricted euxassay_003080_11
TS23: diaphragm Moderate Regionally restricted euxassay_003080_11
Specimen euxassay_003080_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_12
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_12
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_12
TS23: vibrissa Moderate Regionally restricted euxassay_003080_12
TS23: diaphragm Moderate Regionally restricted euxassay_003080_12
Specimen euxassay_003080_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_13
TS23: diaphragm Strong Regionally restricted euxassay_003080_13
Specimen euxassay_003080_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_14
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_14
TS23: diaphragm Strong Regionally restricted euxassay_003080_14
TS23: tail mesenchyme Moderate Regionally restricted euxassay_003080_14
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_003080_14
Specimen euxassay_003080_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_15
TS23: diaphragm Moderate Regionally restricted euxassay_003080_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_003080_15
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_003080_15
Specimen euxassay_003080_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_16
TS23: diaphragm Strong Regionally restricted euxassay_003080_16
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_003080_16
Specimen euxassay_003080_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_003080_17
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_003080_17
Specimen euxassay_003080_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_18
TS23: diaphragm Strong Regionally restricted euxassay_003080_18
TS23: tail mesenchyme Moderate Regionally restricted euxassay_003080_18
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_003080_18
Specimen euxassay_003080_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_19
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_19
TS23: diaphragm Strong Regionally restricted euxassay_003080_19
TS23: tail mesenchyme Moderate Regionally restricted euxassay_003080_19
Specimen euxassay_003080_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_20
TS23: upper jaw incisor Strong Regionally restricted euxassay_003080_20
TS23: lower jaw incisor Strong Regionally restricted euxassay_003080_20
TS23: diaphragm Strong Regionally restricted euxassay_003080_20
Specimen euxassay_003080_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_21
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_21
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_21
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_21
TS23: diaphragm Moderate Regionally restricted euxassay_003080_21
Specimen euxassay_003080_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_22
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_22
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_22
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_22
TS23: diaphragm Weak Regionally restricted euxassay_003080_22
Specimen euxassay_003080_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_23
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_23
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_23
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_23
TS23: diaphragm Weak Regionally restricted euxassay_003080_23
Specimen euxassay_003080_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_003080_24
TS23: Meckel's cartilage Strong Regionally restricted euxassay_003080_24
TS23: lower jaw molar Strong Regionally restricted euxassay_003080_24
TS23: upper jaw molar Strong Regionally restricted euxassay_003080_24
TS23: vibrissa Moderate Regionally restricted euxassay_003080_24
TS23: diaphragm Weak Regionally restricted euxassay_003080_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory