About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823974
Gene symbol: Col11a1
Gene name: collagen, type XI, alpha 1
Probe: MGC clone 59348
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004200_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranium Moderate Regionally restricted euxassay_004200_01
TS23: hand Moderate Regionally restricted euxassay_004200_01
TS23: humerus Moderate Regionally restricted euxassay_004200_01
TS23: radius Moderate Regionally restricted euxassay_004200_01
TS23: ulna Moderate Regionally restricted euxassay_004200_01
TS23: foot Moderate Regionally restricted euxassay_004200_01
TS23: fibula Moderate Regionally restricted euxassay_004200_01
TS23: tibia Moderate Regionally restricted euxassay_004200_01
TS23: femur Moderate Regionally restricted euxassay_004200_01
Specimen euxassay_004200_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_02
TS23: otic capsule Moderate Regionally restricted euxassay_004200_02
TS23: cranium Moderate Regionally restricted euxassay_004200_02
TS23: hand Moderate Regionally restricted euxassay_004200_02
TS23: humerus Moderate Regionally restricted euxassay_004200_02
TS23: radius Moderate Regionally restricted euxassay_004200_02
TS23: ulna Moderate Regionally restricted euxassay_004200_02
TS23: foot Moderate Regionally restricted euxassay_004200_02
TS23: fibula Moderate Regionally restricted euxassay_004200_02
TS23: tibia Moderate Regionally restricted euxassay_004200_02
TS23: femur Moderate Regionally restricted euxassay_004200_02
Specimen euxassay_004200_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_03
TS23: otic capsule Moderate Regionally restricted euxassay_004200_03
TS23: cranium Moderate Regionally restricted euxassay_004200_03
TS23: hand Moderate Regionally restricted euxassay_004200_03
TS23: humerus Moderate Regionally restricted euxassay_004200_03
TS23: foot Moderate Regionally restricted euxassay_004200_03
TS23: fibula Moderate Regionally restricted euxassay_004200_03
TS23: tibia Moderate Regionally restricted euxassay_004200_03
TS23: femur Moderate Regionally restricted euxassay_004200_03
Specimen euxassay_004200_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_04
TS23: mandible Moderate Regionally restricted euxassay_004200_04
TS23: otic capsule Moderate Regionally restricted euxassay_004200_04
TS23: cranium Moderate Regionally restricted euxassay_004200_04
TS23: hand Moderate Regionally restricted euxassay_004200_04
TS23: humerus Moderate Regionally restricted euxassay_004200_04
TS23: foot Moderate Regionally restricted euxassay_004200_04
TS23: femur Moderate Regionally restricted euxassay_004200_04
Specimen euxassay_004200_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_05
TS23: mandible Moderate Regionally restricted euxassay_004200_05
TS23: otic capsule Moderate Regionally restricted euxassay_004200_05
TS23: cranium Moderate Regionally restricted euxassay_004200_05
TS23: hand Moderate Regionally restricted euxassay_004200_05
TS23: humerus Moderate Regionally restricted euxassay_004200_05
TS23: foot Moderate Regionally restricted euxassay_004200_05
TS23: femur Moderate Regionally restricted euxassay_004200_05
Specimen euxassay_004200_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_06
TS23: mandible Moderate Regionally restricted euxassay_004200_06
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_06
TS23: otic capsule Moderate Regionally restricted euxassay_004200_06
TS23: cranium Moderate Regionally restricted euxassay_004200_06
TS23: hand Moderate Regionally restricted euxassay_004200_06
TS23: humerus Moderate Regionally restricted euxassay_004200_06
TS23: femur Moderate Regionally restricted euxassay_004200_06
TS23: foot Moderate Regionally restricted euxassay_004200_06
Specimen euxassay_004200_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_07
TS23: mandible Moderate Regionally restricted euxassay_004200_07
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_07
TS23: otic capsule Moderate Regionally restricted euxassay_004200_07
TS23: cranium Moderate Regionally restricted euxassay_004200_07
TS23: femur Moderate Regionally restricted euxassay_004200_07
Specimen euxassay_004200_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_08
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_08
TS23: mandible Moderate Regionally restricted euxassay_004200_08
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_08
TS23: otic capsule Moderate Regionally restricted euxassay_004200_08
TS23: cranium Moderate Regionally restricted euxassay_004200_08
TS23: femur Moderate Regionally restricted euxassay_004200_08
TS23: clavicle Moderate Regionally restricted euxassay_004200_08
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_08
Specimen euxassay_004200_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_09
TS23: mandible Moderate Regionally restricted euxassay_004200_09
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_09
TS23: otic capsule Moderate Regionally restricted euxassay_004200_09
TS23: cranium Moderate Regionally restricted euxassay_004200_09
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_09
TS23: clavicle Moderate Regionally restricted euxassay_004200_09
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_09
Specimen euxassay_004200_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_10
TS23: mandible Moderate Regionally restricted euxassay_004200_10
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_10
TS23: otic capsule Moderate Regionally restricted euxassay_004200_10
TS23: cranium Moderate Regionally restricted euxassay_004200_10
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_10
TS23: clavicle Moderate Regionally restricted euxassay_004200_10
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_10
Specimen euxassay_004200_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_11
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_11
TS23: nasal septum Moderate Regionally restricted euxassay_004200_11
TS23: mandible Weak Regionally restricted euxassay_004200_11
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_11
TS23: cranium Moderate Regionally restricted euxassay_004200_11
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_11
Specimen euxassay_004200_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_12
TS23: nasal septum Moderate Regionally restricted euxassay_004200_12
TS23: mandible Weak Regionally restricted euxassay_004200_12
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_12
TS23: cranium Moderate Regionally restricted euxassay_004200_12
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_12
Specimen euxassay_004200_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_004200_13
TS23: nasal septum Moderate Regionally restricted euxassay_004200_13
TS23: mandible Moderate Regionally restricted euxassay_004200_13
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_13
TS23: cranium Moderate Regionally restricted euxassay_004200_13
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_13
TS23: hyoid Moderate Regionally restricted euxassay_004200_13
Specimen euxassay_004200_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_004200_14
TS23: nasal septum Moderate Regionally restricted euxassay_004200_14
TS23: mandible Moderate Regionally restricted euxassay_004200_14
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_14
TS23: cranium Moderate Regionally restricted euxassay_004200_14
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_14
TS23: hyoid Moderate Regionally restricted euxassay_004200_14
Specimen euxassay_004200_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_15
TS23: nasal septum Moderate Regionally restricted euxassay_004200_15
TS23: mandible Weak Regionally restricted euxassay_004200_15
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_15
TS23: cranium Moderate Regionally restricted euxassay_004200_15
TS23: axial skeleton Moderate Regionally restricted euxassay_004200_15
TS23: hyoid Moderate Regionally restricted euxassay_004200_15
Specimen euxassay_004200_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_16
TS23: nasal septum Moderate Regionally restricted euxassay_004200_16
TS23: mandible Weak Regionally restricted euxassay_004200_16
TS23: cranium Moderate Regionally restricted euxassay_004200_16
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_16
TS23: hyoid Moderate Regionally restricted euxassay_004200_16
Specimen euxassay_004200_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_17
TS23: mandible Moderate Regionally restricted euxassay_004200_17
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_17
TS23: otic capsule Moderate Regionally restricted euxassay_004200_17
TS23: cranium Moderate Regionally restricted euxassay_004200_17
TS23: pelvic girdle musculature Moderate Regionally restricted euxassay_004200_17
TS23: clavicle Moderate Regionally restricted euxassay_004200_17
Specimen euxassay_004200_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_18
TS23: mandible Moderate Regionally restricted euxassay_004200_18
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_18
TS23: otic capsule Moderate Regionally restricted euxassay_004200_18
TS23: cranium Moderate Regionally restricted euxassay_004200_18
TS23: femur Moderate Regionally restricted euxassay_004200_18
TS23: clavicle Moderate Regionally restricted euxassay_004200_18
Specimen euxassay_004200_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_19
TS23: mandible Moderate Regionally restricted euxassay_004200_19
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_19
TS23: otic capsule Moderate Regionally restricted euxassay_004200_19
TS23: cranium Moderate Regionally restricted euxassay_004200_19
TS23: femur Strong Regionally restricted euxassay_004200_19
TS23: foot Moderate Regionally restricted euxassay_004200_19
TS23: clavicle Moderate Regionally restricted euxassay_004200_19
Specimen euxassay_004200_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_20
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_004200_20
TS23: mandible Moderate Regionally restricted euxassay_004200_20
TS23: palatal shelf Moderate Regionally restricted euxassay_004200_20
TS23: otic capsule Moderate Regionally restricted euxassay_004200_20
TS23: cranium Moderate Regionally restricted euxassay_004200_20
TS23: humerus Moderate Regionally restricted euxassay_004200_20
TS23: femur Strong Regionally restricted euxassay_004200_20
TS23: foot Strong Regionally restricted euxassay_004200_20
TS23: clavicle Moderate Regionally restricted euxassay_004200_20
Specimen euxassay_004200_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_004200_21
TS23: mandible Moderate Regionally restricted euxassay_004200_21
TS23: femur Moderate Regionally restricted euxassay_004200_21
Specimen euxassay_004200_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_22
TS23: femur Weak Regionally restricted euxassay_004200_22
Specimen euxassay_004200_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_23
Specimen euxassay_004200_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_004200_24
TS23: cranium Moderate Regionally restricted euxassay_004200_24
TS23: humerus Moderate Regionally restricted euxassay_004200_24
TS23: hand Moderate Regionally restricted euxassay_004200_24
TS23: foot Moderate Regionally restricted euxassay_004200_24
TS23: fibula Moderate Regionally restricted euxassay_004200_24
TS23: tibia Moderate Regionally restricted euxassay_004200_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory