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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823964
Gene symbol: Cntn6
Gene name: contactin 6
Probe: MGC clone 100179
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005520_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Single cells euxassay_005520_01
TS23: corpus striatum Moderate Single cells euxassay_005520_01
Specimen euxassay_005520_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Single cells euxassay_005520_02
TS23: dorsal grey horn Moderate Single cells euxassay_005520_02
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_02
TS23: pons mantle layer Moderate Single cells euxassay_005520_02
TS23: corpus striatum Moderate Single cells euxassay_005520_02
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_02
TS23: amygdala Present euxassay_005520_02
Specimen euxassay_005520_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal grey horn Moderate Single cells euxassay_005520_03
TS23: ventral grey horn Moderate Single cells euxassay_005520_03
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_03
TS23: pons mantle layer Moderate Single cells euxassay_005520_03
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_03
TS23: amygdala Present euxassay_005520_03
TS23: corpus striatum Moderate Single cells euxassay_005520_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_03
Specimen euxassay_005520_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Single cells euxassay_005520_04
TS23: dorsal grey horn Moderate Single cells euxassay_005520_04
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_04
TS23: pons mantle layer Moderate Single cells euxassay_005520_04
TS23: corpus striatum Moderate Single cells euxassay_005520_04
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_04
TS23: amygdala Present euxassay_005520_04
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_04
Specimen euxassay_005520_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Moderate Single cells euxassay_005520_05
TS23: ventral grey horn Moderate Single cells euxassay_005520_05
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_05
TS23: pons mantle layer Moderate Single cells euxassay_005520_05
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_05
Specimen euxassay_005520_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Moderate Single cells euxassay_005520_06
TS23: ventral grey horn Moderate Single cells euxassay_005520_06
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_06
TS23: pons mantle layer Moderate Single cells euxassay_005520_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_06
Specimen euxassay_005520_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal grey horn Moderate Single cells euxassay_005520_07
TS23: ventral grey horn Moderate Single cells euxassay_005520_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_07
TS23: pons mantle layer Moderate Single cells euxassay_005520_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_07
Specimen euxassay_005520_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_08
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_08
TS23: dorsal grey horn Moderate Single cells euxassay_005520_08
TS23: ventral grey horn Moderate Single cells euxassay_005520_08
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_08
TS23: pons mantle layer Moderate Single cells euxassay_005520_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_08
Specimen euxassay_005520_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_005520_09
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_09
TS23: lower jaw incisor Strong Regionally restricted euxassay_005520_09
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_09
TS23: ventral grey horn Moderate Single cells euxassay_005520_09
TS23: dorsal grey horn Moderate Single cells euxassay_005520_09
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_09
TS23: pons mantle layer Moderate Single cells euxassay_005520_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_09
Specimen euxassay_005520_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw incisor Strong Regionally restricted euxassay_005520_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_005520_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_10
TS23: pons mantle layer Moderate Single cells euxassay_005520_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_10
Specimen euxassay_005520_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_005520_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_005520_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_11
TS23: pons mantle layer Moderate Single cells euxassay_005520_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_11
Specimen euxassay_005520_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_12
TS23: pons mantle layer Moderate Single cells euxassay_005520_12
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_005520_12
Specimen euxassay_005520_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_005520_13
TS23: pons mantle layer Moderate Single cells euxassay_005520_13
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_13
Specimen euxassay_005520_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_14
Specimen euxassay_005520_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_15
Specimen euxassay_005520_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_16
TS23: corpus striatum Moderate Single cells euxassay_005520_16
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_16
TS23: amygdala Present euxassay_005520_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_005520_16
Specimen euxassay_005520_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_17
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_17
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_17
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_17
TS23: amygdala Present euxassay_005520_17
Specimen euxassay_005520_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_18
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_18
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_005520_18
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_18
TS23: amygdala Present euxassay_005520_18
Specimen euxassay_005520_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_19
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_19
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_19
TS23: amygdala Present euxassay_005520_19
Specimen euxassay_005520_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_20
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_20
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_20
TS23: amygdala Present euxassay_005520_20
Specimen euxassay_005520_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Strong Regionally restricted euxassay_005520_21
TS23: lower jaw molar Strong Regionally restricted euxassay_005520_21
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_21
TS23: amygdala Present euxassay_005520_21
TS23: corpus striatum Moderate Single cells euxassay_005520_21
Specimen euxassay_005520_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_005520_22
TS23: telencephalon mantle layer Moderate Single cells euxassay_005520_22
TS23: amygdala Present euxassay_005520_22
TS23: corpus striatum Moderate Single cells euxassay_005520_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory