About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823963
Gene symbol: Cntn3
Gene name: contactin 3
Probe: T36171
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009023_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_06
Specimen euxassay_009023_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_07
Specimen euxassay_009023_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_08
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_08
Specimen euxassay_009023_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_09
TS23: ventral grey horn Moderate Single cells euxassay_009023_09
Specimen euxassay_009023_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_10
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_10
TS23: ventral grey horn Moderate Single cells euxassay_009023_10
Specimen euxassay_009023_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_11
TS23: ventral grey horn Moderate Single cells euxassay_009023_11
Specimen euxassay_009023_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_12
Specimen euxassay_009023_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_13
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_13
TS23: ventral grey horn Moderate Single cells euxassay_009023_13
Specimen euxassay_009023_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_14
TS23: ventral grey horn Moderate Single cells euxassay_009023_14
Specimen euxassay_009023_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_15
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_009023_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_15
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_15
TS23: ventral grey horn Moderate Single cells euxassay_009023_15
Specimen euxassay_009023_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_16
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_009023_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009023_16
TS23: ventral grey horn Moderate Single cells euxassay_009023_16
Specimen euxassay_009023_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009023_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009023_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_17
Specimen euxassay_009023_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_18
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_009023_18
Specimen euxassay_009023_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009023_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory