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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823962
Gene symbol: Cntn2
Gene name: contactin 2
Probe: IMAGE clone 402312
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000546_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: spinal cord mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: telencephalon mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: midbrain mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: metencephalon rest of alar plate mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: pons mantle layer Strong Graded euxassay_000546_01 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_01
Specimen euxassay_000546_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_02 towards pial surface
TS23: medulla oblongata alar plate mantle layer Strong Graded euxassay_000546_02 towards pial surface
TS23: medulla oblongata basal plate mantle layer Strong Graded euxassay_000546_02 towards pial surface
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_02 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_02
Specimen euxassay_000546_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_03 towards pial surface
TS23: telencephalon mantle layer Strong Graded euxassay_000546_03 towards pial surface
TS23: medulla oblongata alar plate mantle layer Strong Graded euxassay_000546_03 towards pial surface
TS23: cerebellum intraventricular portion mantle layer Strong Graded euxassay_000546_03 towards pial surface
TS23: rest of cerebellum mantle layer Strong Graded euxassay_000546_03 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_03
Specimen euxassay_000546_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_04 towards pial surface
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_04 towards pial surface
TS23: rest of cerebellum mantle layer Strong Graded euxassay_000546_04 towards pial surface
TS23: cerebellum intraventricular portion mantle layer Strong Graded euxassay_000546_04 towards pial surface
TS23: medulla oblongata alar plate mantle layer Strong Graded euxassay_000546_04 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_04
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000546_04
Specimen euxassay_000546_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_05 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_05 towards pial surface
TS23: midbrain mantle layer Strong Graded euxassay_000546_05 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_05
Specimen euxassay_000546_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_06 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_06 towards pial surface
TS23: midbrain mantle layer Strong Graded euxassay_000546_06 towards pial surface
TS23: trigeminal ganglion Strong Uniform euxassay_000546_06
TS23: vagus ganglion Strong Uniform euxassay_000546_06
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000546_06
Specimen euxassay_000546_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_07 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_07 towards pial surface
TS23: midbrain mantle layer Strong Graded euxassay_000546_07 towards pial surface
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000546_07
TS23: trigeminal ganglion Strong Uniform euxassay_000546_07
TS23: vagus ganglion Strong Uniform euxassay_000546_07
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000546_07
Specimen euxassay_000546_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_08 towards pial surface
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_08 towards pial surface
TS23: epithalamic recess Strong Graded euxassay_000546_08 towards pial surface
TS23: epithalamus mantle layer Strong Graded euxassay_000546_08 towards pial surface
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000546_08
Specimen euxassay_000546_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_09 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_09 towards pial surface
TS23: thalamus Strong Regionally restricted euxassay_000546_09 prethalamus
TS23: thalamus mantle layer Strong Regionally restricted euxassay_000546_09 prethalamus
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_09
Specimen euxassay_000546_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_10 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_10 towards pial surface
TS23: hypothalamus Strong Regionally restricted euxassay_000546_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_000546_10
TS23: thalamus Strong Regionally restricted euxassay_000546_10 prethalamus
TS23: thalamus mantle layer Strong Regionally restricted euxassay_000546_10 prethalamus
TS23: midbrain mantle layer Strong Regionally restricted euxassay_000546_10
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_10
Specimen euxassay_000546_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000546_11
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_000546_11
TS23: thalamus Strong Regionally restricted euxassay_000546_11 prethalamus
TS23: thalamus mantle layer Strong Regionally restricted euxassay_000546_11 prethalamus
TS23: midbrain mantle layer Strong Graded euxassay_000546_11
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_11
Specimen euxassay_000546_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_12 towards pial surface
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_12 towards pial surface
TS23: midbrain mantle layer Strong Graded euxassay_000546_12
TS23: epithalamic recess Strong Regionally restricted euxassay_000546_12
TS23: epithalamus mantle layer Strong Regionally restricted euxassay_000546_12
Specimen euxassay_000546_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_13
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_13
TS23: midbrain mantle layer Strong Graded euxassay_000546_13
Specimen euxassay_000546_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_000546_14
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_000546_14
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000546_14
TS23: hypothalamus Strong Regionally restricted euxassay_000546_14
TS23: thalamus mantle layer Strong Regionally restricted euxassay_000546_14
TS23: spinal cord Strong Graded euxassay_000546_14
TS23: spinal cord mantle layer Strong Graded euxassay_000546_14
TS23: alar columns Strong Graded euxassay_000546_14
Specimen euxassay_000546_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord lateral wall Strong Regionally restricted euxassay_000546_15
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_000546_15
TS23: midbrain mantle layer Strong Graded euxassay_000546_15
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_15
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_15
Specimen euxassay_000546_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_16
TS23: midbrain mantle layer Strong Graded euxassay_000546_16
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_16
TS23: trigeminal ganglion Strong Uniform euxassay_000546_16
Specimen euxassay_000546_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Graded euxassay_000546_17
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_17
TS23: trigeminal ganglion Strong Uniform euxassay_000546_17
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_17
Specimen euxassay_000546_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_18
TS23: olfactory cortex mantle layer Strong Graded euxassay_000546_18
TS23: tail dorsal root ganglion Strong Uniform euxassay_000546_18
TS23: trigeminal ganglion Strong Uniform euxassay_000546_18
TS23: vagus ganglion Strong Uniform euxassay_000546_18
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000546_18
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000546_18
Specimen euxassay_000546_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_19
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000546_19
TS23: vagus ganglion Strong Uniform euxassay_000546_19
TS23: trigeminal ganglion Strong Uniform euxassay_000546_19
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000546_19
Specimen euxassay_000546_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_20
TS23: trigeminal ganglion Strong Uniform euxassay_000546_20
Specimen euxassay_000546_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Graded euxassay_000546_21
TS23: cerebral cortex mantle layer Strong Graded euxassay_000546_21
TS23: neural retina Strong Uniform euxassay_000546_21
TS23: trigeminal ganglion Strong Uniform euxassay_000546_21
Specimen euxassay_000546_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Uniform euxassay_000546_22
TS23: telencephalon mantle layer Strong Uniform euxassay_000546_22
Specimen euxassay_000546_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_000546_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory