About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823901
Gene symbol: Clcn6
Gene name: chloride channel, voltage-sensitive 6
Probe: T35147
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008300_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_008300_01
Specimen euxassay_008300_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_008300_02
Specimen euxassay_008300_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_03
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_03
TS23: neural retina Weak Spotted euxassay_008300_03
Specimen euxassay_008300_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_04
TS23: facial ganglion Weak Regionally restricted euxassay_008300_04
Specimen euxassay_008300_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_05
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_05
Specimen euxassay_008300_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_008300_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_008300_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_06
TS23: pons mantle layer Weak Regionally restricted euxassay_008300_06 trigeminal motor nucleus
Specimen euxassay_008300_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_008300_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_008300_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_07 facial motor nucleus
Specimen euxassay_008300_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_008300_08 facial motor nucleus
Specimen euxassay_008300_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008300_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_09 facial motor nucleus
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_09
TS23: cervical ganglion Weak Regionally restricted euxassay_008300_09
Specimen euxassay_008300_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008300_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_10
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_10
Specimen euxassay_008300_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_11
Specimen euxassay_008300_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_12
Specimen euxassay_008300_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_008300_13
Specimen euxassay_008300_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_008300_14
Specimen euxassay_008300_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_15 facial motor nucleus
Specimen euxassay_008300_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008300_16 facial motor nucleus
TS23: cervical ganglion Weak Regionally restricted euxassay_008300_16
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_008300_16
Specimen euxassay_008300_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal nerve Weak Regionally restricted euxassay_008300_17
TS23: vagus ganglion Weak Regionally restricted euxassay_008300_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_008300_17
TS23: pons mantle layer Weak Regionally restricted euxassay_008300_17 trigeminal motor nucleus
Specimen euxassay_008300_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_008300_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_008300_18
Specimen euxassay_008300_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_19
Specimen euxassay_008300_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_008300_20
Specimen euxassay_008300_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_21
TS23: facial ganglion Moderate Regionally restricted euxassay_008300_21
Specimen euxassay_008300_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008300_22
Specimen euxassay_008300_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Spotted euxassay_008300_23
Specimen euxassay_008300_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Spotted euxassay_008300_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory