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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823856
Gene symbol: Chrna3
Gene name: cholinergic receptor, nicotinic, alpha polypeptide 3
Probe: T35140
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007155_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_01
TS23: stomach Moderate Regionally restricted euxassay_007155_01 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_01
Specimen euxassay_007155_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_02
TS23: stomach Moderate Regionally restricted euxassay_007155_02 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_02
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_02
Specimen euxassay_007155_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_03
TS23: stomach Moderate Regionally restricted euxassay_007155_03 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_03
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_03
Specimen euxassay_007155_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007155_04 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_04
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_04
Specimen euxassay_007155_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007155_05 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_05
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_05
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007155_05
Specimen euxassay_007155_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007155_06 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_06
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_007155_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_007155_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_06
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007155_06
TS23: pons mantle layer Weak Regionally restricted euxassay_007155_06 trigeminal motor nucleus
Specimen euxassay_007155_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007155_07 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_07
TS23: midgut Moderate Regionally restricted euxassay_007155_07 smooth muscle
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_007155_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_007155_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_07
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_07
Specimen euxassay_007155_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007155_08 smooth muscle
TS23: stomach Moderate Regionally restricted euxassay_007155_08 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_08
TS23: vagus ganglion Weak Regionally restricted euxassay_007155_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007155_08 facial motor nucleus
Specimen euxassay_007155_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_09 smooth muscle
TS23: stomach Strong Regionally restricted euxassay_007155_09 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_09
TS23: trigeminal nerve Strong Regionally restricted euxassay_007155_09
TS23: cervical ganglion Strong Regionally restricted euxassay_007155_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007155_09 facial motor nucleus
Specimen euxassay_007155_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_10 smooth muscle
TS23: stomach Strong Regionally restricted euxassay_007155_10 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_10
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_007155_10
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_10
Specimen euxassay_007155_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_11 smooth muscle
TS23: stomach Strong Regionally restricted euxassay_007155_11 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_11
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_007155_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_11
Specimen euxassay_007155_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_12 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_12
TS23: thoracic ganglion Moderate Regionally restricted euxassay_007155_12
TS23: midbrain marginal layer Strong Regionally restricted euxassay_007155_12 roof plate
Specimen euxassay_007155_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Strong Regionally restricted euxassay_007155_13 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_13
TS23: midgut Strong Regionally restricted euxassay_007155_13 smooth muscle
TS23: thoracic ganglion Moderate Regionally restricted euxassay_007155_13
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_13
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_13
Specimen euxassay_007155_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Strong Regionally restricted euxassay_007155_14 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_14
TS23: midgut Strong Regionally restricted euxassay_007155_14 smooth muscle
TS23: thoracic ganglion Moderate Regionally restricted euxassay_007155_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_14
TS23: tongue Strong Spotted euxassay_007155_14
Specimen euxassay_007155_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Strong Regionally restricted euxassay_007155_15 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_15
TS23: midgut Strong Regionally restricted euxassay_007155_15 smooth muscle
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_007155_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007155_15 facial motor nucleus
Specimen euxassay_007155_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Strong Regionally restricted euxassay_007155_16 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_16
TS23: midgut Strong Regionally restricted euxassay_007155_16 smooth muscle
TS23: trigeminal nerve Strong Regionally restricted euxassay_007155_16
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_007155_16
TS23: cervical ganglion Moderate Regionally restricted euxassay_007155_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_007155_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007155_16 facial motor nucleus
Specimen euxassay_007155_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_17 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_17
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_17
TS23: trigeminal nerve Strong Regionally restricted euxassay_007155_17
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_007155_17
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_007155_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007155_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_007155_17 trigeminal motor nucleus
Specimen euxassay_007155_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_18 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_007155_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_007155_18
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_007155_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_007155_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007155_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007155_18
Specimen euxassay_007155_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_19 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_19
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_19
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_007155_19
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_007155_19
Specimen euxassay_007155_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_007155_20 smooth muscle
TS23: smooth muscle tissue Present euxassay_007155_20
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_20
Specimen euxassay_007155_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_22
TS23: trigeminal ganglion Moderate Single cells euxassay_007155_22
Specimen euxassay_007155_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_23
Specimen euxassay_007155_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_007155_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory