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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823774
Gene symbol: Cdhr1
Gene name: cadherin-related family member 1
Probe: IMAGE clone 1225022
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009099_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_01
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_01
Specimen euxassay_009099_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_02
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_02
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_02
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_02
Specimen euxassay_009099_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_03
TS23: facial ganglion Moderate Regionally restricted euxassay_009099_03
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_03
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_03
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_03
Specimen euxassay_009099_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_04
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_009099_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_009099_04
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_04
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_04
TS23: dorsal root ganglion Strong Single cells euxassay_009099_04
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_04
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_04
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_04
TS23: pons mantle layer Strong Single cells euxassay_009099_04
Specimen euxassay_009099_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_05
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_009099_05
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_05
TS23: dorsal root ganglion Strong Single cells euxassay_009099_05
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_05
TS23: pons mantle layer Strong Single cells euxassay_009099_05
TS23: renal cortex Moderate Regionally restricted euxassay_009099_05
Specimen euxassay_009099_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_06
TS23: dorsal root ganglion Strong Single cells euxassay_009099_06
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_06
TS23: ventral grey horn Moderate Single cells euxassay_009099_06
TS23: renal cortex Moderate Regionally restricted euxassay_009099_06
TS23: medullary renal tubule Strong Regionally restricted euxassay_009099_06
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_06
Specimen euxassay_009099_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sublingual gland primordium Strong Regionally restricted euxassay_009099_07
TS23: dorsal root ganglion Strong Single cells euxassay_009099_07
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_07
TS23: ventral grey horn Moderate Single cells euxassay_009099_07
TS23: medullary renal tubule Strong Regionally restricted euxassay_009099_07
TS23: renal cortex Moderate Regionally restricted euxassay_009099_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_07
TS23: pancreas Moderate Regionally restricted euxassay_009099_07
Specimen euxassay_009099_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sublingual gland primordium Strong Regionally restricted euxassay_009099_08
TS23: dorsal root ganglion Strong Single cells euxassay_009099_08
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_08
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_08
TS23: ventral grey horn Moderate Single cells euxassay_009099_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_08
TS23: vomeronasal organ Strong Regionally restricted euxassay_009099_08
TS23: thymus primordium Strong Regionally restricted euxassay_009099_08
TS23: pancreas Moderate Regionally restricted euxassay_009099_08
Specimen euxassay_009099_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Single cells euxassay_009099_09
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_09
TS23: ventral grey horn Moderate Single cells euxassay_009099_09
TS23: naris Strong Regionally restricted euxassay_009099_09
TS23: thymus primordium Strong Regionally restricted euxassay_009099_09
Specimen euxassay_009099_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_10
TS23: ventral grey horn Moderate Single cells euxassay_009099_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_10
TS23: thymus primordium Strong Regionally restricted euxassay_009099_10
Specimen euxassay_009099_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sublingual gland primordium Strong Regionally restricted euxassay_009099_11
TS23: dorsal root ganglion Strong Single cells euxassay_009099_11
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_11
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_11
TS23: vomeronasal organ Strong Regionally restricted euxassay_009099_11
Specimen euxassay_009099_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sublingual gland primordium Strong Regionally restricted euxassay_009099_12
TS23: dorsal root ganglion Strong Single cells euxassay_009099_12
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009099_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_009099_12
TS23: renal cortex Moderate Regionally restricted euxassay_009099_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_12
TS23: naris Strong Regionally restricted euxassay_009099_12
TS23: pancreas Moderate Regionally restricted euxassay_009099_12
Specimen euxassay_009099_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_009099_13
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_13
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_13
TS23: dorsal root ganglion Strong Single cells euxassay_009099_13
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009099_13
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_13
TS23: pons mantle layer Strong Single cells euxassay_009099_13
TS23: renal cortex Moderate Regionally restricted euxassay_009099_13
TS23: medullary renal tubule Strong Regionally restricted euxassay_009099_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_13
Specimen euxassay_009099_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_14
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_009099_14
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_009099_14
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_14
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009099_14
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_009099_14
TS23: medullary renal tubule Strong Regionally restricted euxassay_009099_14
TS23: renal cortex Moderate Regionally restricted euxassay_009099_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_14
Specimen euxassay_009099_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_009099_15
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_15
TS23: renal cortex Moderate Regionally restricted euxassay_009099_15
TS23: medullary renal tubule Strong Regionally restricted euxassay_009099_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_009099_15
Specimen euxassay_009099_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_16
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_009099_16
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_16
TS23: renal cortex Moderate Regionally restricted euxassay_009099_16
Specimen euxassay_009099_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009099_17
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_17
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_17
Specimen euxassay_009099_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009099_18
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_18
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_18
Specimen euxassay_009099_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_009099_19
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_19
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_19
Specimen euxassay_009099_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_009099_20
TS23: telencephalon mantle layer Strong Single cells euxassay_009099_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory