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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823773
Gene symbol: Cdh9
Gene name: cadherin 9
Probe: T36141
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009005_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009005_03
TS23: midbrain mantle layer Weak Single cells euxassay_009005_03
Specimen euxassay_009005_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_04
TS23: corpus striatum Moderate Single cells euxassay_009005_04
TS23: midbrain mantle layer Weak Single cells euxassay_009005_04
Specimen euxassay_009005_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_05
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009005_05
TS23: corpus striatum Moderate Single cells euxassay_009005_05
Specimen euxassay_009005_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009005_06
TS23: ventral grey horn Moderate Regionally restricted euxassay_009005_06
Specimen euxassay_009005_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009005_07
TS23: ventral grey horn Strong Regionally restricted euxassay_009005_07
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_009005_07
Specimen euxassay_009005_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009005_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_009005_08
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_009005_08
Specimen euxassay_009005_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009005_09
TS23: ventral grey horn Weak Regionally restricted euxassay_009005_09
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_009005_09
Specimen euxassay_009005_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009005_10
TS23: ventral grey horn Strong Regionally restricted euxassay_009005_10
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_009005_10
TS23: midbrain mantle layer Weak Single cells euxassay_009005_10
Specimen euxassay_009005_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009005_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009005_11
Specimen euxassay_009005_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009005_12
TS23: midbrain mantle layer Weak Single cells euxassay_009005_12
Specimen euxassay_009005_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009005_13
TS23: midbrain mantle layer Moderate Single cells euxassay_009005_13
Specimen euxassay_009005_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_009005_14
TS23: midbrain mantle layer Moderate Single cells euxassay_009005_14
Specimen euxassay_009005_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Weak Single cells euxassay_009005_16
Specimen euxassay_009005_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Single cells euxassay_009005_17
Specimen euxassay_009005_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Single cells euxassay_009005_18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory