About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823746
Gene symbol: Cd9
Gene name: CD9 antigen
Probe: IMAGE clone 1885943
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_001933_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_001933_01
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_01
Specimen euxassay_001933_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_001933_02
TS23: stomach Strong Regionally restricted euxassay_001933_02
TS23: lung Moderate Spotted euxassay_001933_02
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_02
Specimen euxassay_001933_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_03
TS23: vibrissa Moderate Regionally restricted euxassay_001933_03
TS23: stomach Strong Regionally restricted euxassay_001933_03
TS23: lung Moderate Spotted euxassay_001933_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_001933_03
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_03
Specimen euxassay_001933_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_04
TS23: stomach Strong Regionally restricted euxassay_001933_04
TS23: lung Moderate Spotted euxassay_001933_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_001933_04
Specimen euxassay_001933_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_05
TS23: vibrissa Strong Regionally restricted euxassay_001933_05
TS23: stomach Strong Regionally restricted euxassay_001933_05
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_05
TS23: lung Moderate Spotted euxassay_001933_05
TS23: oral epithelium Strong Regionally restricted euxassay_001933_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_001933_05
TS23: renal calyx Strong Regionally restricted euxassay_001933_05
Specimen euxassay_001933_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_06
TS23: vibrissa Strong Regionally restricted euxassay_001933_06
TS23: stomach Strong Regionally restricted euxassay_001933_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_06
TS23: lung Moderate Spotted euxassay_001933_06
TS23: oral epithelium Strong Regionally restricted euxassay_001933_06
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_001933_06
TS23: renal calyx Strong Regionally restricted euxassay_001933_06
Specimen euxassay_001933_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_07
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_001933_07
TS23: cervical ganglion Strong Regionally restricted euxassay_001933_07
TS23: vibrissa Strong Regionally restricted euxassay_001933_07
TS23: stomach Strong Regionally restricted euxassay_001933_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_07
TS23: lung Moderate Spotted euxassay_001933_07
TS23: oral epithelium Strong Regionally restricted euxassay_001933_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_07
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_07
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_001933_07
TS23: renal calyx Strong Regionally restricted euxassay_001933_07
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_07
Specimen euxassay_001933_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_08
TS23: stomach Moderate Regionally restricted euxassay_001933_08
TS23: midgut Moderate Regionally restricted euxassay_001933_08
TS23: lung Moderate Spotted euxassay_001933_08
TS23: oral epithelium Strong Regionally restricted euxassay_001933_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_08
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_001933_08
TS23: renal pelvis Strong Regionally restricted euxassay_001933_08
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_08
Specimen euxassay_001933_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_09
TS23: stomach Moderate Regionally restricted euxassay_001933_09
TS23: midgut Moderate Regionally restricted euxassay_001933_09
TS23: oral epithelium Strong Regionally restricted euxassay_001933_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_09
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_09
TS23: ventral grey horn Strong Regionally restricted euxassay_001933_09
TS23: renal pelvis Strong Regionally restricted euxassay_001933_09
TS23: thymus primordium Weak Regionally restricted euxassay_001933_09
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_09
Specimen euxassay_001933_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_10
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_001933_10
TS23: midgut Moderate Regionally restricted euxassay_001933_10
TS23: oral epithelium Strong Regionally restricted euxassay_001933_10
TS23: esophagus Strong Regionally restricted euxassay_001933_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_10
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_10
TS23: ventral grey horn Strong Regionally restricted euxassay_001933_10
TS23: thymus primordium Weak Regionally restricted euxassay_001933_10
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_10
Specimen euxassay_001933_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_001933_11
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_11
TS23: thoracic ganglion Strong Regionally restricted euxassay_001933_11
TS23: urethra Strong Regionally restricted euxassay_001933_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: bladder Strong Regionally restricted euxassay_001933_11
TS23: rectum Strong Regionally restricted euxassay_001933_11
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_001933_11
TS23: hindgut Moderate Regionally restricted euxassay_001933_11
TS23: midgut Moderate Regionally restricted euxassay_001933_11
TS23: lung Moderate Spotted euxassay_001933_11
TS23: oral epithelium Strong Regionally restricted euxassay_001933_11
TS23: esophagus Strong Regionally restricted euxassay_001933_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_11
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_001933_11
TS23: ventral grey horn Strong Regionally restricted euxassay_001933_11
TS23: thymus primordium Weak Regionally restricted euxassay_001933_11
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_11
TS23: axial skeleton Moderate Regionally restricted euxassay_001933_11
Specimen euxassay_001933_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_12
TS23: thoracic ganglion Strong Regionally restricted euxassay_001933_12
TS23: urethra Strong Regionally restricted euxassay_001933_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: bladder Strong Regionally restricted euxassay_001933_12
TS23: midgut Moderate Regionally restricted euxassay_001933_12
TS23: lung Moderate Spotted euxassay_001933_12
TS23: oral epithelium Strong Regionally restricted euxassay_001933_12
TS23: esophagus Strong Regionally restricted euxassay_001933_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_12
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_001933_12
TS23: ventral grey horn Strong Regionally restricted euxassay_001933_12
TS23: thymus primordium Weak Regionally restricted euxassay_001933_12
TS23: nucleus pulposus Moderate Regionally restricted euxassay_001933_12
TS23: axial skeleton Moderate Regionally restricted euxassay_001933_12
Specimen euxassay_001933_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_13
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_001933_13
TS23: midgut Moderate Regionally restricted euxassay_001933_13
TS23: lung Moderate Spotted euxassay_001933_13
TS23: oral epithelium Strong Regionally restricted euxassay_001933_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_13
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_001933_13
Specimen euxassay_001933_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_14
TS23: cervical ganglion Strong Regionally restricted euxassay_001933_14
TS23: midgut Moderate Regionally restricted euxassay_001933_14
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_14
TS23: lung Moderate Spotted euxassay_001933_14
TS23: oral epithelium Strong Regionally restricted euxassay_001933_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_001933_14
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_001933_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_14
Specimen euxassay_001933_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_15
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_001933_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_15
TS23: lung Moderate Spotted euxassay_001933_15
TS23: oral epithelium Strong Regionally restricted euxassay_001933_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_001933_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_001933_15
TS23: renal pelvis Strong Regionally restricted euxassay_001933_15
Specimen euxassay_001933_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_16
TS23: olfactory cortex ventricular layer Moderate Uniform euxassay_001933_16
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_16
TS23: lung Moderate Spotted euxassay_001933_16
TS23: oral epithelium Strong Regionally restricted euxassay_001933_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_001933_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_001933_16
TS23: renal pelvis Strong Regionally restricted euxassay_001933_16
Specimen euxassay_001933_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_001933_17
TS23: lung Moderate Spotted euxassay_001933_17
TS23: oral epithelium Strong Regionally restricted euxassay_001933_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_001933_17
TS23: renal calyx Strong Regionally restricted euxassay_001933_17
Specimen euxassay_001933_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_18
TS23: lung Moderate Spotted euxassay_001933_18
TS23: oral epithelium Strong Regionally restricted euxassay_001933_18
TS23: renal calyx Strong Regionally restricted euxassay_001933_18
Specimen euxassay_001933_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_19
TS23: vibrissa Strong Regionally restricted euxassay_001933_19
TS23: lung Moderate Spotted euxassay_001933_19
TS23: oral epithelium Strong Regionally restricted euxassay_001933_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_001933_19
Specimen euxassay_001933_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_20
TS23: vibrissa Strong Regionally restricted euxassay_001933_20
TS23: lung Moderate Spotted euxassay_001933_20
TS23: oral epithelium Strong Regionally restricted euxassay_001933_20
Specimen euxassay_001933_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_21
TS23: vibrissa Strong Regionally restricted euxassay_001933_21
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_21
Specimen euxassay_001933_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_001933_22
TS23: vibrissa Strong Regionally restricted euxassay_001933_22
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_22
Specimen euxassay_001933_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_23
Specimen euxassay_001933_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_001933_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory