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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823572
Gene symbol: Cachd1
Gene name: cache domain containing 1
Probe: T35003
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006310_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006310_02
Specimen euxassay_006310_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_03
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_03
Specimen euxassay_006310_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_04
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_04
TS23: pons ventricular layer Strong Regionally restricted euxassay_006310_04
Specimen euxassay_006310_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_05
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_05
TS23: pons ventricular layer Strong Regionally restricted euxassay_006310_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_05
Specimen euxassay_006310_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_06
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_06
TS23: pons ventricular layer Strong Regionally restricted euxassay_006310_06
Specimen euxassay_006310_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_07
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_07
TS23: upper jaw molar Weak Regionally restricted euxassay_006310_07
TS23: lower jaw molar Weak Regionally restricted euxassay_006310_07
Specimen euxassay_006310_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_08
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_08
Specimen euxassay_006310_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_09
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006310_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_09
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006310_09
Specimen euxassay_006310_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_10
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006310_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_10
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006310_10
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_006310_10
Specimen euxassay_006310_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_11
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006310_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006310_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_11
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006310_11
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_006310_11
Specimen euxassay_006310_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_12
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_006310_12
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_006310_12
TS23: naris Moderate Regionally restricted euxassay_006310_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_006310_12
TS23: upper jaw incisor Weak Regionally restricted euxassay_006310_12
Specimen euxassay_006310_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_13
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006310_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006310_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006310_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_13
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_13
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_006310_13
TS23: naris Moderate Regionally restricted euxassay_006310_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006310_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006310_13
Specimen euxassay_006310_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_14
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_006310_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006310_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_006310_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_14
Specimen euxassay_006310_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_15
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006310_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_006310_15
TS23: naris Moderate Regionally restricted euxassay_006310_15
Specimen euxassay_006310_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_16
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_16
TS23: naris Moderate Regionally restricted euxassay_006310_16
TS23: lower jaw incisor Weak Regionally restricted euxassay_006310_16
TS23: upper jaw incisor Weak Regionally restricted euxassay_006310_16
Specimen euxassay_006310_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_17
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006310_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006310_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_17
TS23: naris Moderate Regionally restricted euxassay_006310_17
Specimen euxassay_006310_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_18
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_006310_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_006310_18
Specimen euxassay_006310_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_19
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_19
TS23: pons ventricular layer Strong Regionally restricted euxassay_006310_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_006310_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_006310_19
Specimen euxassay_006310_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_20
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_006310_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_20
TS23: pons ventricular layer Strong Regionally restricted euxassay_006310_20
Specimen euxassay_006310_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_006310_21
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006310_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006310_21
Specimen euxassay_006310_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006310_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory