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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823535
Gene symbol: C1ql3
Gene name: C1q-like 3
Probe: MGC clone 25969
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004547_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004547_01
Specimen euxassay_004547_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004547_02
Specimen euxassay_004547_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004547_03
Specimen euxassay_004547_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004547_04
Specimen euxassay_004547_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_004547_06
Specimen euxassay_004547_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004547_07
TS23: vagus ganglion Strong Regionally restricted euxassay_004547_07
Specimen euxassay_004547_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_08
Specimen euxassay_004547_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_09
Specimen euxassay_004547_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_10
TS23: ventral grey horn Moderate Single cells euxassay_004547_10
Specimen euxassay_004547_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_11
TS23: ventral grey horn Moderate Single cells euxassay_004547_11
Specimen euxassay_004547_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004547_12 basal plate
TS23: ventral grey horn Moderate Single cells euxassay_004547_12
Specimen euxassay_004547_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_004547_13 basal plate
TS23: ventral grey horn Moderate Single cells euxassay_004547_13
Specimen euxassay_004547_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_004547_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_004547_14 basal plate
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_14
TS23: ventral grey horn Moderate Single cells euxassay_004547_14
Specimen euxassay_004547_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004547_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_15
TS23: ventral grey horn Moderate Single cells euxassay_004547_15
Specimen euxassay_004547_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004547_16
TS23: vagus ganglion Strong Regionally restricted euxassay_004547_16
Specimen euxassay_004547_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_17
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004547_17
TS23: vagus ganglion Strong Regionally restricted euxassay_004547_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004547_17
Specimen euxassay_004547_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_004547_18
TS23: vagus ganglion Strong Regionally restricted euxassay_004547_18
Specimen euxassay_004547_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_004547_19
Specimen euxassay_004547_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004547_20
Specimen euxassay_004547_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004547_21
Specimen euxassay_004547_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_004547_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory