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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823466
Gene symbol: Bhlhb9
Gene name: basic helix-loop-helix domain containing, class B9
Probe: T30710
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012088_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_012088_01
TS23: tibia Moderate Regionally restricted euxassay_012088_01
TS23: fibula Moderate Regionally restricted euxassay_012088_01
TS23: neural retina Weak Regionally restricted euxassay_012088_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012088_01
TS23: exoccipital bone Moderate Regionally restricted euxassay_012088_01
TS23: temporal bone Moderate Regionally restricted euxassay_012088_01
TS23: brain Moderate Regionally restricted euxassay_012088_01
Specimen euxassay_012088_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Moderate Regionally restricted euxassay_012088_02
TS23: tibia Moderate Regionally restricted euxassay_012088_02
TS23: neural retina Weak Regionally restricted euxassay_012088_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_012088_02
TS23: temporal bone Strong Regionally restricted euxassay_012088_02
TS23: exoccipital bone Strong Regionally restricted euxassay_012088_02
TS23: brain Moderate Regionally restricted euxassay_012088_02
Specimen euxassay_012088_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Weak Regionally restricted euxassay_012088_03
TS23: neural retina Weak Regionally restricted euxassay_012088_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012088_03
TS23: temporal bone Moderate Regionally restricted euxassay_012088_03
TS23: exoccipital bone Moderate Regionally restricted euxassay_012088_03
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_03
TS23: brain Moderate Regionally restricted euxassay_012088_03
Specimen euxassay_012088_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Weak Regionally restricted euxassay_012088_04
TS23: scapula Weak Regionally restricted euxassay_012088_04
TS23: temporal bone Weak Regionally restricted euxassay_012088_04
TS23: exoccipital bone Weak Regionally restricted euxassay_012088_04
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_04
TS23: facial ganglion Moderate Regionally restricted euxassay_012088_04
TS23: brain Moderate Regionally restricted euxassay_012088_04
Specimen euxassay_012088_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Weak Regionally restricted euxassay_012088_05
TS23: scapula Weak Regionally restricted euxassay_012088_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012088_05
TS23: temporal bone Moderate Regionally restricted euxassay_012088_05
TS23: exoccipital bone Moderate Regionally restricted euxassay_012088_05
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_012088_05
TS23: rib Weak Regionally restricted euxassay_012088_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_05
TS23: facial ganglion Moderate Regionally restricted euxassay_012088_05
TS23: brain Moderate Regionally restricted euxassay_012088_05
Specimen euxassay_012088_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012088_06
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012088_06
TS23: temporal bone Moderate Regionally restricted euxassay_012088_06
TS23: exoccipital bone Moderate Regionally restricted euxassay_012088_06
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_012088_06
TS23: rib Weak Regionally restricted euxassay_012088_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_06
TS23: brain Moderate Regionally restricted euxassay_012088_06
Specimen euxassay_012088_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012088_07
TS23: exoccipital bone Weak Regionally restricted euxassay_012088_07
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_012088_07
TS23: rib Weak Regionally restricted euxassay_012088_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_07
TS23: brain Moderate Regionally restricted euxassay_012088_07
Specimen euxassay_012088_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012088_08
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_012088_08
TS23: otic capsule Weak Regionally restricted euxassay_012088_08
TS23: rib Weak Regionally restricted euxassay_012088_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_08
TS23: vagus ganglion Moderate Regionally restricted euxassay_012088_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_08
TS23: brain Moderate Regionally restricted euxassay_012088_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012088_08
Specimen euxassay_012088_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_012088_09
TS23: basioccipital bone Weak Regionally restricted euxassay_012088_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012088_09
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_09
TS23: otic capsule Weak Regionally restricted euxassay_012088_09
TS23: axial skeleton Moderate Regionally restricted euxassay_012088_09
TS23: rib Moderate Regionally restricted euxassay_012088_09
TS23: trigeminal nerve Weak Regionally restricted euxassay_012088_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_09
TS23: brain Moderate Regionally restricted euxassay_012088_09
TS23: spinal cord Moderate Regionally restricted euxassay_012088_09
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012088_09
Specimen euxassay_012088_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_012088_10
TS23: basisphenoid bone Moderate Regionally restricted euxassay_012088_10
TS23: basioccipital bone Moderate Regionally restricted euxassay_012088_10
TS23: axial skeleton Moderate Regionally restricted euxassay_012088_10
TS23: rib Moderate Regionally restricted euxassay_012088_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_10
TS23: spinal cord Moderate Regionally restricted euxassay_012088_10
TS23: brain Moderate Regionally restricted euxassay_012088_10
Specimen euxassay_012088_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Moderate Regionally restricted euxassay_012088_11
TS23: basioccipital bone Moderate Regionally restricted euxassay_012088_11
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_11
TS23: axial skeleton Moderate Regionally restricted euxassay_012088_11
TS23: rib Moderate Regionally restricted euxassay_012088_11
TS23: spinal cord Moderate Regionally restricted euxassay_012088_11
TS23: brain Moderate Regionally restricted euxassay_012088_11
Specimen euxassay_012088_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Weak Regionally restricted euxassay_012088_12
TS23: basisphenoid bone Weak Regionally restricted euxassay_012088_12
TS23: axial skeleton Weak Regionally restricted euxassay_012088_12
TS23: spinal cord Moderate Regionally restricted euxassay_012088_12
TS23: brain Moderate Regionally restricted euxassay_012088_12
Specimen euxassay_012088_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Moderate Regionally restricted euxassay_012088_13
TS23: basioccipital bone Moderate Regionally restricted euxassay_012088_13
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_13
TS23: axial skeleton Moderate Regionally restricted euxassay_012088_13
TS23: spinal cord Moderate Regionally restricted euxassay_012088_13
TS23: brain Moderate Regionally restricted euxassay_012088_13
Specimen euxassay_012088_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basisphenoid bone Moderate Regionally restricted euxassay_012088_14
TS23: basioccipital bone Moderate Regionally restricted euxassay_012088_14
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_14
TS23: axial skeleton Moderate Regionally restricted euxassay_012088_14
TS23: spinal cord Moderate Regionally restricted euxassay_012088_14
TS23: brain Moderate Regionally restricted euxassay_012088_14
Specimen euxassay_012088_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: basioccipital bone Weak Regionally restricted euxassay_012088_15
TS23: Meckel's cartilage Weak Regionally restricted euxassay_012088_15
TS23: rib Weak Regionally restricted euxassay_012088_15
TS23: axial skeleton Weak Regionally restricted euxassay_012088_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_15
TS23: spinal cord Moderate Regionally restricted euxassay_012088_15
TS23: brain Moderate Regionally restricted euxassay_012088_15
Specimen euxassay_012088_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_012088_16
TS23: basioccipital bone Weak Regionally restricted euxassay_012088_16
TS23: otic capsule Weak Regionally restricted euxassay_012088_16
TS23: rib Weak Regionally restricted euxassay_012088_16
TS23: axial skeleton Weak Regionally restricted euxassay_012088_16
TS23: trigeminal nerve Weak Regionally restricted euxassay_012088_16
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012088_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012088_16
TS23: spinal cord Moderate Regionally restricted euxassay_012088_16
TS23: brain Moderate Regionally restricted euxassay_012088_16
Specimen euxassay_012088_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012088_17
TS23: vagus ganglion Weak Regionally restricted euxassay_012088_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_17
TS23: spinal cord Moderate Regionally restricted euxassay_012088_17
TS23: brain Moderate Regionally restricted euxassay_012088_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012088_17
Specimen euxassay_012088_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012088_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012088_18
TS23: brain Moderate Regionally restricted euxassay_012088_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012088_18
Specimen euxassay_012088_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012088_19
TS23: brain Moderate Regionally restricted euxassay_012088_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012088_19
Specimen euxassay_012088_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012088_20
TS23: brain Moderate Regionally restricted euxassay_012088_20
Specimen euxassay_012088_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012088_21
TS23: brain Moderate Regionally restricted euxassay_012088_21
Specimen euxassay_012088_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_012088_22
TS23: brain Moderate Regionally restricted euxassay_012088_22
Specimen euxassay_012088_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_012088_23
TS23: brain Moderate Regionally restricted euxassay_012088_23
Specimen euxassay_012088_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_012088_24
TS23: brain Moderate Regionally restricted euxassay_012088_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory