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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823453
Gene symbol: Bcl9
Gene name: B cell CLL/lymphoma 9
Probe: T31051
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 5A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: collecting duct Absent euxassay_013718_12 Expression was not detected in the ureteric tubules.
TS23: ureteric tip Absent euxassay_013718_12
TS23: cap mesenchyme Weak euxassay_013718_12 Expression is present in the condensing mesenchyme.
TS23: renal vesicle Weak euxassay_013718_12 Expression is present in the renal vesicles/comma-shaped bodies.
TS23: s-shaped body Weak euxassay_013718_12
TS23: cortical renal tubule Absent euxassay_013718_12 Expression was not detected in the proximal tubules.
TS23: maturing glomerular tuft Absent euxassay_013718_12 Expression was not detected in the glomeruli.
TS23: renal vasculature Absent euxassay_013718_12 Expression was not detected in the capillaries.
TS23: renal cortical interstitium Absent euxassay_013718_12 Expression was not detected in the stroma.
TS23: renal capsule Absent euxassay_013718_12
Specimen Table S5 - Bcl9: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebellum Moderate
Specimen Table S8: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neocortex Weak euxassay_013718_12
TS23: hippocampus Weak euxassay_013718_12
TS23: corpus striatum Weak euxassay_013718_12
TS23: telencephalon septum Weak euxassay_013718_12
TS23: thalamus Weak euxassay_013718_12
TS23: hypothalamus Weak euxassay_013718_12
TS23: pretectum Weak euxassay_013718_12
TS23: superior colliculus Weak euxassay_013718_12
TS23: inferior colliculus Weak euxassay_013718_12
TS23: midbrain tegmentum Weak euxassay_013718_12
TS23: cerebellum Strong euxassay_013718_12
TS23: spinal cord Weak euxassay_013718_12
TS23: skin Absent euxassay_013718_12
TS23: lung Moderate euxassay_013718_12
TS23: metanephros Weak euxassay_013718_12
TS23: liver Absent euxassay_013718_12
TS23: thyroid gland Absent euxassay_013718_12
TS23: pituitary gland Absent euxassay_013718_12
TS23: pancreas Absent euxassay_013718_12
TS23: adrenal gland Absent euxassay_013718_12
TS23: heart Absent euxassay_013718_12
TS23: thymus primordium Weak euxassay_013718_12
TS23: vertebral axis musculature Absent euxassay_013718_12
TS23: axial skeleton Absent euxassay_013718_12
Specimen euxassay_013718_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_013718_07
Specimen euxassay_013718_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_013718_08
Specimen euxassay_013718_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_09
Specimen euxassay_013718_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_10
Specimen euxassay_013718_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_11
Specimen euxassay_013718_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_13
Specimen euxassay_013718_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_14
Specimen euxassay_013718_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_15
Specimen euxassay_013718_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_013718_16
Specimen euxassay_013718_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_013718_17
Specimen euxassay_013718_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_18
Specimen euxassay_013718_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013718_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory