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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823399
Gene symbol: Bbs9
Gene name: Bardet-Biedl syndrome 9
Probe: MGC clone 51441
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003475_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003475_01
TS23: neural retina Weak Regionally restricted euxassay_003475_01
Specimen euxassay_003475_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003475_02
TS23: neural retina Weak Regionally restricted euxassay_003475_02
Specimen euxassay_003475_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003475_03
TS23: neural retina Weak Regionally restricted euxassay_003475_03
Specimen euxassay_003475_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_04
TS23: facial ganglion Moderate Regionally restricted euxassay_003475_04
TS23: neural retina Weak Regionally restricted euxassay_003475_04
Specimen euxassay_003475_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_05
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_05
TS23: choroid invagination Moderate Regionally restricted euxassay_003475_05
Specimen euxassay_003475_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_06
TS23: midgut Moderate Regionally restricted euxassay_003475_06
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_06
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_06
Specimen euxassay_003475_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_07
TS23: facial ganglion Moderate Regionally restricted euxassay_003475_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003475_07
TS23: midgut Moderate Regionally restricted euxassay_003475_07
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_07
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_07
Specimen euxassay_003475_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003475_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_08
TS23: midgut Moderate Regionally restricted euxassay_003475_08
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_08
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_08
Specimen euxassay_003475_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003475_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_09
TS23: midgut Strong Regionally restricted euxassay_003475_09
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_09
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003475_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_09
Specimen euxassay_003475_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_003475_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_10
TS23: midgut Moderate Regionally restricted euxassay_003475_10
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_10
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003475_10
TS23: cervical ganglion Moderate Regionally restricted euxassay_003475_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_10
Specimen euxassay_003475_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_11
TS23: midgut Moderate Regionally restricted euxassay_003475_11
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_11
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_11
Specimen euxassay_003475_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_12
TS23: midgut Moderate Regionally restricted euxassay_003475_12
TS23: 3rd ventricle Moderate Regionally restricted euxassay_003475_12
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_12
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003475_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_12
Specimen euxassay_003475_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_003475_13
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003475_13
TS23: midgut Strong Regionally restricted euxassay_003475_13
TS23: 3rd ventricle Moderate Regionally restricted euxassay_003475_13
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_13
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003475_13
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_13
Specimen euxassay_003475_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_14
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003475_14
TS23: midgut Strong Regionally restricted euxassay_003475_14
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_14
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_14
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003475_14
Specimen euxassay_003475_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_15
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003475_15
TS23: midgut Moderate Regionally restricted euxassay_003475_15
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_15
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_15
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003475_15
Specimen euxassay_003475_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: adenohypophysis Moderate Regionally restricted euxassay_003475_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_16
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003475_16
TS23: midgut Moderate Regionally restricted euxassay_003475_16
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_16
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003475_16 facial motor nucleus
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_16
Specimen euxassay_003475_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_003475_17
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003475_17
TS23: midgut Moderate Regionally restricted euxassay_003475_17
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_17
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003475_17
TS23: thoracic ganglion Moderate Regionally restricted euxassay_003475_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_17
Specimen euxassay_003475_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_18
TS23: vagus ganglion Moderate Regionally restricted euxassay_003475_18
TS23: naris Moderate Regionally restricted euxassay_003475_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_18
TS23: midgut Moderate Regionally restricted euxassay_003475_18
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_18
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_003475_18
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_003475_18
TS23: cervical ganglion Moderate Regionally restricted euxassay_003475_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_18
Specimen euxassay_003475_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_19
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003475_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003475_19
TS23: midgut Moderate Regionally restricted euxassay_003475_19
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_19
TS23: 3rd ventricle Moderate Regionally restricted euxassay_003475_19
TS23: cervical ganglion Moderate Regionally restricted euxassay_003475_19
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003475_19
Specimen euxassay_003475_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003475_20
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_003475_20
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_20
Specimen euxassay_003475_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003475_21
TS23: facial ganglion Strong Regionally restricted euxassay_003475_21
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_21
Specimen euxassay_003475_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003475_22
TS23: facial ganglion Strong Regionally restricted euxassay_003475_22
TS23: 4th ventricle Moderate Regionally restricted euxassay_003475_22
Specimen euxassay_003475_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003475_23
TS23: neural retina Weak Regionally restricted euxassay_003475_23
Specimen euxassay_003475_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003475_24
TS23: neural retina Weak Regionally restricted euxassay_003475_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory