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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823391
Gene symbol: Barhl2
Gene name: BarH like homeobox 2
Probe: MGC clone 90874
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007161_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_01
TS23: neural retina Strong Single cells euxassay_007161_01
Specimen euxassay_007161_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_02
TS23: neural retina Strong Single cells euxassay_007161_02
Specimen euxassay_007161_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_03
TS23: neural retina Strong Single cells euxassay_007161_03
Specimen euxassay_007161_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_04
TS23: neural retina Strong Single cells euxassay_007161_04
Specimen euxassay_007161_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_05
Specimen euxassay_007161_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Single cells euxassay_007161_06
Specimen euxassay_007161_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Moderate Single cells euxassay_007161_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007161_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007161_07
Specimen euxassay_007161_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007161_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007161_08
Specimen euxassay_007161_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007161_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007161_09
Specimen euxassay_007161_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007161_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_007161_10
Specimen euxassay_007161_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_007161_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_11
Specimen euxassay_007161_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_12
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_12
TS23: dorsal grey horn Strong Regionally restricted euxassay_007161_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_12
Specimen euxassay_007161_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_13
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_13
Specimen euxassay_007161_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_14
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_14
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_14
Specimen euxassay_007161_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_15
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_15
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_15
Specimen euxassay_007161_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_16
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_007161_16
TS23: dorsal grey horn Strong Regionally restricted euxassay_007161_16
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_16
Specimen euxassay_007161_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_007161_17
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_17
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_17
Specimen euxassay_007161_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_007161_18
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_007161_18
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007161_18
Specimen euxassay_007161_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Strong Regionally restricted euxassay_007161_19
TS23: midbrain mantle layer Weak Regionally restricted euxassay_007161_19
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_007161_19
Specimen euxassay_007161_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Regionally restricted euxassay_007161_20
TS23: dorsal grey horn Moderate Regionally restricted euxassay_007161_20
Specimen euxassay_007161_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Regionally restricted euxassay_007161_21
Specimen euxassay_007161_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_22
Specimen euxassay_007161_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_23
TS23: neural retina Strong Single cells euxassay_007161_23
Specimen euxassay_007161_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: corpus striatum Strong Single cells euxassay_007161_24
TS23: neural retina Strong Single cells euxassay_007161_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory