About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823377
Gene symbol: B4galnt1
Gene name: beta-1,4-N-acetyl-galactosaminyl transferase 1
Probe: MGC clone 68221
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002539_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Uniform euxassay_002539_01
Specimen euxassay_002539_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_02
TS23: neural retina Moderate Regionally restricted euxassay_002539_02
Specimen euxassay_002539_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_03
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_03
TS23: neural retina Moderate Regionally restricted euxassay_002539_03
Specimen euxassay_002539_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_04
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_04
TS23: hindbrain Strong Uniform euxassay_002539_04
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_04
TS23: facial ganglion Weak Regionally restricted euxassay_002539_04
TS23: neural retina Moderate Regionally restricted euxassay_002539_04
Specimen euxassay_002539_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Strong Uniform euxassay_002539_05
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_05
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_05
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_05
TS23: stomach Strong Regionally restricted euxassay_002539_05
TS23: midgut Strong Regionally restricted euxassay_002539_05
Specimen euxassay_002539_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Strong Uniform euxassay_002539_06
TS23: hindbrain Strong Uniform euxassay_002539_06
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_06
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_06
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_002539_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_06
TS23: midgut Strong Regionally restricted euxassay_002539_06
TS23: stomach Strong Regionally restricted euxassay_002539_06
Specimen euxassay_002539_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Strong Uniform euxassay_002539_07
TS23: hindbrain Strong Uniform euxassay_002539_07
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_07
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_002539_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_002539_07
TS23: midgut Strong Regionally restricted euxassay_002539_07
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_07
TS23: upper jaw molar Strong Regionally restricted euxassay_002539_07
TS23: lower jaw molar Strong Regionally restricted euxassay_002539_07
Specimen euxassay_002539_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_08
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_08
TS23: diencephalon Strong Uniform euxassay_002539_08
TS23: hindbrain Strong Uniform euxassay_002539_08
TS23: midbrain Strong Uniform euxassay_002539_08
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_08
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_002539_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002539_08
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_08
TS23: midgut Strong Regionally restricted euxassay_002539_08
TS23: upper jaw molar Strong Regionally restricted euxassay_002539_08
TS23: lower jaw molar Strong Regionally restricted euxassay_002539_08
Specimen euxassay_002539_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_09
TS23: diencephalon Strong Uniform euxassay_002539_09
TS23: hindbrain Strong Uniform euxassay_002539_09
TS23: midbrain Strong Uniform euxassay_002539_09
TS23: spinal cord Strong Uniform euxassay_002539_09
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002539_09
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_09
TS23: midgut Strong Regionally restricted euxassay_002539_09
Specimen euxassay_002539_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Strong Uniform euxassay_002539_10
TS23: spinal cord Strong Uniform euxassay_002539_10
TS23: hindbrain Strong Uniform euxassay_002539_10
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_10
TS23: diencephalon Strong Uniform euxassay_002539_10
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_10
TS23: midgut Strong Regionally restricted euxassay_002539_10
Specimen euxassay_002539_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Strong Uniform euxassay_002539_11
TS23: midbrain Strong Uniform euxassay_002539_11
TS23: hindbrain Strong Uniform euxassay_002539_11
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_11
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_11
TS23: diencephalon Strong Uniform euxassay_002539_11
TS23: thymus primordium Moderate Uniform euxassay_002539_11
TS23: midgut Strong Regionally restricted euxassay_002539_11
Specimen euxassay_002539_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Strong Uniform euxassay_002539_12
TS23: midbrain Strong Uniform euxassay_002539_12
TS23: hindbrain Strong Uniform euxassay_002539_12
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_12
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_12
TS23: diencephalon Strong Uniform euxassay_002539_12
TS23: thymus primordium Moderate Uniform euxassay_002539_12
TS23: midgut Strong Regionally restricted euxassay_002539_12
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_12
TS23: hindgut Strong Regionally restricted euxassay_002539_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_002539_12
TS23: upper jaw incisor Strong Regionally restricted euxassay_002539_12
Specimen euxassay_002539_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_13
TS23: spinal cord Strong Uniform euxassay_002539_13
TS23: midbrain Strong Uniform euxassay_002539_13
TS23: hindbrain Strong Uniform euxassay_002539_13
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_13
TS23: diencephalon Strong Uniform euxassay_002539_13
TS23: thymus primordium Weak Uniform euxassay_002539_13
TS23: midgut Strong Regionally restricted euxassay_002539_13
TS23: hindgut Strong Regionally restricted euxassay_002539_13
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_002539_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_002539_13
Specimen euxassay_002539_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Uniform euxassay_002539_14
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_14
TS23: spinal cord Strong Uniform euxassay_002539_14
TS23: midbrain Strong Uniform euxassay_002539_14
TS23: hindbrain Strong Uniform euxassay_002539_14
TS23: thymus primordium Moderate Uniform euxassay_002539_14
TS23: midgut Strong Regionally restricted euxassay_002539_14
TS23: hindgut Strong Regionally restricted euxassay_002539_14
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_14
Specimen euxassay_002539_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Strong Uniform euxassay_002539_15
TS23: midbrain Strong Uniform euxassay_002539_15
TS23: hindbrain Strong Uniform euxassay_002539_15
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_15
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_15
TS23: thymus primordium Moderate Uniform euxassay_002539_15
TS23: foregut-midgut junction Strong Regionally restricted euxassay_002539_15
TS23: hindgut Strong Regionally restricted euxassay_002539_15
TS23: midgut Strong Regionally restricted euxassay_002539_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_002539_15
Specimen euxassay_002539_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_16
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_16
TS23: diencephalon Strong Uniform euxassay_002539_16
TS23: hindbrain Strong Uniform euxassay_002539_16
TS23: midbrain Strong Uniform euxassay_002539_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002539_16
TS23: midgut Strong Regionally restricted euxassay_002539_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_002539_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_002539_16
Specimen euxassay_002539_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain Strong Uniform euxassay_002539_17
TS23: hindbrain Strong Uniform euxassay_002539_17
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_17
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_17
TS23: diencephalon Strong Uniform euxassay_002539_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_17
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_002539_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002539_17
TS23: midgut Strong Regionally restricted euxassay_002539_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_002539_17
Specimen euxassay_002539_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Uniform euxassay_002539_18
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_18
TS23: hindbrain Strong Uniform euxassay_002539_18
TS23: midbrain Strong Uniform euxassay_002539_18
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_18
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_002539_18
TS23: lower jaw molar Strong Regionally restricted euxassay_002539_18
TS23: upper jaw molar Strong Regionally restricted euxassay_002539_18
Specimen euxassay_002539_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_19
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_19
TS23: hindbrain Strong Uniform euxassay_002539_19
TS23: trigeminal ganglion Weak Regionally restricted euxassay_002539_19
TS23: facial ganglion Weak Regionally restricted euxassay_002539_19
TS23: lower jaw molar Strong Regionally restricted euxassay_002539_19
TS23: upper jaw molar Strong Regionally restricted euxassay_002539_19
Specimen euxassay_002539_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_20
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_20
TS23: trigeminal nerve Weak Regionally restricted euxassay_002539_20
Specimen euxassay_002539_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_21
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_21
TS23: trigeminal nerve Weak Regionally restricted euxassay_002539_21
Specimen euxassay_002539_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_22
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_22
TS23: neural retina Moderate Regionally restricted euxassay_002539_22
Specimen euxassay_002539_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Uniform euxassay_002539_23
TS23: telencephalon mantle layer Strong Uniform euxassay_002539_23
TS23: neural retina Moderate Regionally restricted euxassay_002539_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory