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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823098
Gene symbol: Alx3
Gene name: aristaless-like homeobox 3
Probe: T55004
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019454_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_01
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_01
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_01
TS23: lung Weak Regionally restricted euxassay_019454_01
Specimen euxassay_019454_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_02
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_02
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_02
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_02
TS23: lung Weak Regionally restricted euxassay_019454_02
Specimen euxassay_019454_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_03
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019454_03
TS23: lung Weak Regionally restricted euxassay_019454_03
Specimen euxassay_019454_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_019454_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_04
TS23: dorsal grey horn Strong Regionally restricted euxassay_019454_04
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019454_04
TS23: lung Weak Regionally restricted euxassay_019454_04
Specimen euxassay_019454_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_05
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_05
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_019454_05
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_05
TS23: dorsal grey horn Strong Regionally restricted euxassay_019454_05
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019454_05
TS23: lung Weak Regionally restricted euxassay_019454_05
Specimen euxassay_019454_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_06
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019454_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_06
TS23: ventral grey horn Moderate Regionally restricted euxassay_019454_06
TS23: dorsal grey horn Moderate Regionally restricted euxassay_019454_06
TS23: thymus primordium Weak Regionally restricted euxassay_019454_06
TS23: lung Weak Regionally restricted euxassay_019454_06
Specimen euxassay_019454_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019454_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_07
TS23: ventral grey horn Moderate Regionally restricted euxassay_019454_07
TS23: thymus primordium Moderate Regionally restricted euxassay_019454_07
TS23: lung Weak Regionally restricted euxassay_019454_07
Specimen euxassay_019454_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_019454_08
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_019454_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_08
TS23: spinal cord floor plate Moderate Regionally restricted euxassay_019454_08
TS23: thymus primordium Weak Regionally restricted euxassay_019454_08
Specimen euxassay_019454_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019454_09
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_019454_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_019454_09
TS23: dorsal grey horn Moderate Regionally restricted euxassay_019454_09
TS23: thymus primordium Weak Regionally restricted euxassay_019454_09
Specimen euxassay_019454_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_019454_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_10
TS23: ventral grey horn Strong Regionally restricted euxassay_019454_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_019454_10
TS23: thymus primordium Weak Regionally restricted euxassay_019454_10
Specimen euxassay_019454_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_019454_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019454_11
TS23: lung Weak Regionally restricted euxassay_019454_11
Specimen euxassay_019454_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_12
TS23: lung Weak Regionally restricted euxassay_019454_12
Specimen euxassay_019454_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_13
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_13
TS23: dorsal root ganglion Weak Regionally restricted euxassay_019454_13
TS23: lung Weak Regionally restricted euxassay_019454_13
Specimen euxassay_019454_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019454_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019454_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019454_14
TS23: lung Weak Regionally restricted euxassay_019454_14
Specimen euxassay_019454_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_15
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_019454_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_15
TS23: lung Weak Regionally restricted euxassay_019454_15
Specimen euxassay_019454_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_16
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_16
TS23: lung Weak Regionally restricted euxassay_019454_16
Specimen euxassay_019454_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_17
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019454_17
Specimen euxassay_019454_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019454_18
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019454_18
Specimen euxassay_019454_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_019454_19
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019454_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory