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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823082
Gene symbol: Aldh1l1
Gene name: aldehyde dehydrogenase 1 family, member L1
Probe: IMAGE clone 2192278
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009095_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_02
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_02
Specimen euxassay_009095_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_03
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_03
Specimen euxassay_009095_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_04
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_04
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_04
Specimen euxassay_009095_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_05
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_05
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_05
TS23: midbrain mantle layer Strong Single cells euxassay_009095_05
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_05
TS23: testis Moderate Regionally restricted euxassay_009095_05
Specimen euxassay_009095_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_06
TS23: midbrain mantle layer Strong Single cells euxassay_009095_06
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_06
TS23: testis Moderate Regionally restricted euxassay_009095_06
Specimen euxassay_009095_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_07
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_07
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_07
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_009095_07
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_07
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_07
TS23: pons mantle layer Strong Single cells euxassay_009095_07
TS23: midbrain mantle layer Strong Single cells euxassay_009095_07
TS23: testis Moderate Regionally restricted euxassay_009095_07
Specimen euxassay_009095_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_08
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_08
TS23: midbrain mantle layer Strong Single cells euxassay_009095_08
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_08
TS23: pons mantle layer Strong Single cells euxassay_009095_08
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_08
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_009095_08
TS23: testis Moderate Regionally restricted euxassay_009095_08
TS23: adrenal gland Weak Regionally restricted euxassay_009095_08
Specimen euxassay_009095_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_09
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_09
TS23: ventral grey horn Strong Single cells euxassay_009095_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_09
TS23: midbrain mantle layer Strong Single cells euxassay_009095_09
TS23: adrenal gland Weak Regionally restricted euxassay_009095_09
Specimen euxassay_009095_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_10
TS23: ventral grey horn Strong Single cells euxassay_009095_10
TS23: spinal cord ventricular layer Strong Single cells euxassay_009095_10
TS23: adrenal gland Weak Regionally restricted euxassay_009095_10
Specimen euxassay_009095_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_009095_11
TS23: ventral grey horn Strong Single cells euxassay_009095_11
TS23: spinal cord ventricular layer Strong Single cells euxassay_009095_11
Specimen euxassay_009095_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_12
TS23: spinal cord ventricular layer Strong Single cells euxassay_009095_12
TS23: ventral grey horn Strong Single cells euxassay_009095_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_12
TS23: pons mantle layer Strong Single cells euxassay_009095_12
Specimen euxassay_009095_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_13
TS23: ventral grey horn Strong Single cells euxassay_009095_13
TS23: spinal cord ventricular layer Strong Single cells euxassay_009095_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_13
TS23: pons mantle layer Strong Single cells euxassay_009095_13
TS23: midbrain mantle layer Strong Single cells euxassay_009095_13
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_009095_13
Specimen euxassay_009095_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_009095_14
TS23: ventral grey horn Strong Single cells euxassay_009095_14
TS23: midbrain mantle layer Strong Single cells euxassay_009095_14
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_14
TS23: pons mantle layer Strong Single cells euxassay_009095_14
Specimen euxassay_009095_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_15
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_009095_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_009095_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_15
TS23: pons mantle layer Strong Single cells euxassay_009095_15
TS23: midbrain mantle layer Strong Single cells euxassay_009095_15
Specimen euxassay_009095_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_16
TS23: midbrain mantle layer Strong Single cells euxassay_009095_16
TS23: pons mantle layer Strong Single cells euxassay_009095_16
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_009095_16
TS23: adrenal gland Weak Regionally restricted euxassay_009095_16
Specimen euxassay_009095_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_17
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_17
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_17
TS23: pons mantle layer Strong Single cells euxassay_009095_17
TS23: adrenal gland Weak Regionally restricted euxassay_009095_17
Specimen euxassay_009095_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_009095_18
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_18
Specimen euxassay_009095_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_19
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_19
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_19
TS23: testis Moderate Regionally restricted euxassay_009095_19
Specimen euxassay_009095_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_009095_20
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_20
TS23: testis Weak Regionally restricted euxassay_009095_20
Specimen euxassay_009095_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_21
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_21
Specimen euxassay_009095_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Regionally restricted euxassay_009095_22
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_22
Specimen euxassay_009095_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_009095_23
TS23: telencephalon mantle layer Strong Single cells euxassay_009095_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory