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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822945
Gene symbol: Acsl6
Gene name: acyl-CoA synthetase long-chain family member 6
Probe: MGC clone 36650
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002680_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_01
TS23: neural retina Moderate Regionally restricted euxassay_002680_01
Specimen euxassay_002680_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_02
TS23: neural retina Moderate Regionally restricted euxassay_002680_02
Specimen euxassay_002680_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_03
TS23: neural retina Weak Regionally restricted euxassay_002680_03
Specimen euxassay_002680_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_04
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_04
TS23: hindbrain Strong Uniform euxassay_002680_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_04
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_04
Specimen euxassay_002680_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_05
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_05
TS23: hindbrain Strong Uniform euxassay_002680_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_05
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_05
Specimen euxassay_002680_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_06
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_06
TS23: hindbrain Strong Uniform euxassay_002680_06
TS23: midbrain Strong Uniform euxassay_002680_06
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002680_06
Specimen euxassay_002680_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_07
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_07
TS23: midbrain Strong Uniform euxassay_002680_07
TS23: hindbrain Strong Uniform euxassay_002680_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002680_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_07
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_07
Specimen euxassay_002680_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_08
TS23: spinal cord Strong Uniform euxassay_002680_08
TS23: midbrain Strong Uniform euxassay_002680_08
TS23: hindbrain Strong Uniform euxassay_002680_08
TS23: diencephalon Strong Uniform euxassay_002680_08
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002680_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_08
Specimen euxassay_002680_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_09
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_09
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_09
TS23: spinal cord Strong Uniform euxassay_002680_09
TS23: midbrain Strong Uniform euxassay_002680_09
TS23: hindbrain Strong Uniform euxassay_002680_09
TS23: diencephalon Strong Uniform euxassay_002680_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_002680_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_09
Specimen euxassay_002680_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_10
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_10
TS23: spinal cord Strong Uniform euxassay_002680_10
TS23: midbrain Strong Uniform euxassay_002680_10
TS23: hindbrain Strong Uniform euxassay_002680_10
TS23: diencephalon Strong Uniform euxassay_002680_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_002680_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_10
Specimen euxassay_002680_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_11
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_11
TS23: spinal cord Strong Uniform euxassay_002680_11
TS23: midbrain Strong Uniform euxassay_002680_11
TS23: hindbrain Strong Uniform euxassay_002680_11
TS23: diencephalon Strong Uniform euxassay_002680_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_11
Specimen euxassay_002680_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_12
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_12
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_12
TS23: spinal cord Strong Uniform euxassay_002680_12
TS23: midbrain Strong Uniform euxassay_002680_12
TS23: hindbrain Strong Uniform euxassay_002680_12
TS23: diencephalon Strong Uniform euxassay_002680_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_12
Specimen euxassay_002680_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_13
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_13
TS23: spinal cord Strong Uniform euxassay_002680_13
TS23: midbrain Strong Uniform euxassay_002680_13
TS23: hindbrain Strong Uniform euxassay_002680_13
TS23: diencephalon Strong Uniform euxassay_002680_13
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_13
Specimen euxassay_002680_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_14
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_14
TS23: spinal cord Strong Uniform euxassay_002680_14
TS23: midbrain Strong Uniform euxassay_002680_14
TS23: hindbrain Strong Uniform euxassay_002680_14
TS23: diencephalon Strong Uniform euxassay_002680_14
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_14
Specimen euxassay_002680_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_15
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_15
TS23: spinal cord Strong Uniform euxassay_002680_15
TS23: midbrain Strong Uniform euxassay_002680_15
TS23: hindbrain Strong Uniform euxassay_002680_15
TS23: diencephalon Strong Uniform euxassay_002680_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_15
Specimen euxassay_002680_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_16
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_16
TS23: spinal cord Strong Uniform euxassay_002680_16
TS23: hindbrain Strong Uniform euxassay_002680_16
TS23: midbrain Strong Uniform euxassay_002680_16
TS23: diencephalon Strong Uniform euxassay_002680_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_16
Specimen euxassay_002680_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_002680_17
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_17
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_17
TS23: hindbrain Strong Uniform euxassay_002680_17
TS23: midbrain Strong Uniform euxassay_002680_17
TS23: spinal cord Strong Uniform euxassay_002680_17
TS23: diencephalon Strong Uniform euxassay_002680_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_002680_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_17
Specimen euxassay_002680_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_18
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_18
TS23: hindbrain Strong Uniform euxassay_002680_18
TS23: midbrain Strong Uniform euxassay_002680_18
TS23: diencephalon Strong Uniform euxassay_002680_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_18
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002680_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_002680_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_002680_18
Specimen euxassay_002680_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_19
TS23: hindbrain Strong Uniform euxassay_002680_19
TS23: midbrain Strong Uniform euxassay_002680_19
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_19
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_002680_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_19
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_19
TS23: dorsal root ganglion Weak Regionally restricted euxassay_002680_19
Specimen euxassay_002680_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_20
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_20
TS23: hindbrain Strong Uniform euxassay_002680_20
TS23: midbrain Strong Uniform euxassay_002680_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_20
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_002680_20
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_20
Specimen euxassay_002680_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_21
TS23: hindbrain Strong Uniform euxassay_002680_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_21
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_21
Specimen euxassay_002680_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_22
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_002680_22
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_002680_22
TS23: facial ganglion Moderate Regionally restricted euxassay_002680_22
Specimen euxassay_002680_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_23
TS23: neural retina Weak Regionally restricted euxassay_002680_23
Specimen euxassay_002680_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_002680_24
TS23: neural retina Weak Regionally restricted euxassay_002680_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory