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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822831
Gene symbol: Ssc5d
Gene name: scavenger receptor cysteine rich family, 5 domains
Probe: T38164
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016465_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_03
Specimen euxassay_016465_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_04
TS23: facial ganglion Moderate Single cells euxassay_016465_04
Specimen euxassay_016465_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_05
TS23: facial ganglion Moderate Single cells euxassay_016465_05
Specimen euxassay_016465_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_06
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_016465_06
Specimen euxassay_016465_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_07
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_016465_07
Specimen euxassay_016465_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_08
TS23: vagus ganglion Moderate Single cells euxassay_016465_08
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_08
Specimen euxassay_016465_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016465_09 facial motor nucleus
Specimen euxassay_016465_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_016465_10
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_10
Specimen euxassay_016465_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_016465_11
Specimen euxassay_016465_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_016465_12
Specimen euxassay_016465_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_016465_13
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_13
Specimen euxassay_016465_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Regionally restricted euxassay_016465_14
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_14
Specimen euxassay_016465_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_016465_15
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016465_15 facial motor nucleus
Specimen euxassay_016465_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_016465_16
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016465_16 facial motor nucleus
Specimen euxassay_016465_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_17
TS23: pons mantle layer Weak Regionally restricted euxassay_016465_17 trigeminal motor nucleus
TS23: vagus ganglion Moderate Single cells euxassay_016465_17
TS23: trigeminal ganglion Moderate Single cells euxassay_016465_17
Specimen euxassay_016465_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_016465_18
TS23: trigeminal ganglion Weak Single cells euxassay_016465_18
TS23: glossopharyngeal ganglion Weak Single cells euxassay_016465_18
Specimen euxassay_016465_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Single cells euxassay_016465_19
Specimen euxassay_016465_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Single cells euxassay_016465_20
Specimen euxassay_016465_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Weak Regionally restricted euxassay_016465_23
TS23: foot mesenchyme Weak Regionally restricted euxassay_016465_23
Specimen euxassay_016465_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Weak Regionally restricted euxassay_016465_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory