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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822824
Gene symbol: Rbfox1
Gene name: RNA binding protein, fox-1 homolog (C. elegans) 1
Probe: T38800
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_013824_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Single cells euxassay_013824_01
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_01
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_01
Specimen euxassay_013824_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Single cells euxassay_013824_02
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_02
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_02
Specimen euxassay_013824_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Single cells euxassay_013824_03
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_03
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_03
Specimen euxassay_013824_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_04
TS23: facial ganglion Strong Single cells euxassay_013824_04
TS23: neural retina Moderate Single cells euxassay_013824_04
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_04
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_04
Specimen euxassay_013824_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_05
TS23: facial ganglion Strong Single cells euxassay_013824_05
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_05
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_05
Specimen euxassay_013824_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_06
TS23: facial ganglion Strong Single cells euxassay_013824_06
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_06
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_06
TS23: pons mantle layer Strong Single cells euxassay_013824_06
Specimen euxassay_013824_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_07
TS23: glossopharyngeal ganglion Strong Single cells euxassay_013824_07
TS23: facial ganglion Strong Single cells euxassay_013824_07
TS23: dorsal root ganglion Strong Single cells euxassay_013824_07
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_07
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_07
TS23: pons mantle layer Strong Single cells euxassay_013824_07
TS23: midbrain mantle layer Strong Single cells euxassay_013824_07
Specimen euxassay_013824_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_08
TS23: glossopharyngeal ganglion Strong Single cells euxassay_013824_08
TS23: dorsal root ganglion Strong Single cells euxassay_013824_08
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_08
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_08
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_08
TS23: midbrain mantle layer Strong Single cells euxassay_013824_08
TS23: pons mantle layer Strong Single cells euxassay_013824_08
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_08
Specimen euxassay_013824_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Single cells euxassay_013824_09
TS23: dorsal root ganglion Strong Single cells euxassay_013824_09
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_013824_09
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_09
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_09
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_09
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_09
TS23: midbrain mantle layer Strong Single cells euxassay_013824_09
TS23: pons mantle layer Strong Single cells euxassay_013824_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_09
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_09
Specimen euxassay_013824_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_10
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_10
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_10
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_10
TS23: midbrain mantle layer Strong Single cells euxassay_013824_10
TS23: pons mantle layer Strong Single cells euxassay_013824_10
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_10
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_10
Specimen euxassay_013824_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Regionally restricted euxassay_013824_11
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_11
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_11
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_11
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_11
TS23: midbrain mantle layer Strong Single cells euxassay_013824_11
TS23: pons mantle layer Strong Single cells euxassay_013824_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_11
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_11
Specimen euxassay_013824_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Regionally restricted euxassay_013824_12
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_013824_12
TS23: hypothalamus mantle layer Moderate Single cells euxassay_013824_12
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_12
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_12
TS23: midbrain mantle layer Strong Single cells euxassay_013824_12
TS23: pons mantle layer Strong Single cells euxassay_013824_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_12
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_12
Specimen euxassay_013824_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Single cells euxassay_013824_13
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_013824_13
TS23: hypothalamus mantle layer Moderate Single cells euxassay_013824_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_13
TS23: midbrain mantle layer Strong Single cells euxassay_013824_13
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_13
Specimen euxassay_013824_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Single cells euxassay_013824_14
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_14
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_14
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_14
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_14
TS23: midbrain mantle layer Strong Single cells euxassay_013824_14
TS23: pons mantle layer Strong Single cells euxassay_013824_14
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_14
TS23: spinal cord mantle layer Strong Single cells euxassay_013824_14
Specimen euxassay_013824_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Single cells euxassay_013824_15
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_15
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_15
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_15
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_15
TS23: midbrain mantle layer Strong Single cells euxassay_013824_15
TS23: pons mantle layer Strong Single cells euxassay_013824_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_15
Specimen euxassay_013824_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Single cells euxassay_013824_16
TS23: glossopharyngeal ganglion Strong Single cells euxassay_013824_16
TS23: dorsal root ganglion Strong Single cells euxassay_013824_16
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_013824_16
TS23: cervical ganglion Strong Regionally restricted euxassay_013824_16
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_16
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_16
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_16
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_16
TS23: midbrain mantle layer Strong Single cells euxassay_013824_16
TS23: pons mantle layer Strong Single cells euxassay_013824_16
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_16
Specimen euxassay_013824_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Single cells euxassay_013824_17
TS23: trigeminal ganglion Strong Single cells euxassay_013824_17
TS23: trigeminal nerve Strong Single cells euxassay_013824_17
TS23: dorsal root ganglion Strong Single cells euxassay_013824_17
TS23: cervical ganglion Strong Regionally restricted euxassay_013824_17
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_17
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_17
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_17
TS23: pons mantle layer Strong Single cells euxassay_013824_17
TS23: midbrain mantle layer Strong Single cells euxassay_013824_17
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_17
Specimen euxassay_013824_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Single cells euxassay_013824_18
TS23: trigeminal ganglion Strong Single cells euxassay_013824_18
TS23: dorsal root ganglion Strong Single cells euxassay_013824_18
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_18
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_18
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_18
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_18
TS23: pons mantle layer Strong Single cells euxassay_013824_18
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_013824_18
TS23: midbrain mantle layer Strong Single cells euxassay_013824_18
Specimen euxassay_013824_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: facial ganglion Strong Single cells euxassay_013824_19
TS23: trigeminal ganglion Strong Single cells euxassay_013824_19
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_19
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_19
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_013824_19
TS23: hypothalamus mantle layer Strong Single cells euxassay_013824_19
TS23: pons mantle layer Strong Single cells euxassay_013824_19
TS23: midbrain mantle layer Strong Single cells euxassay_013824_19
Specimen euxassay_013824_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_20
TS23: facial ganglion Strong Single cells euxassay_013824_20
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_20
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_20
TS23: midbrain mantle layer Strong Single cells euxassay_013824_20
TS23: pons mantle layer Strong Single cells euxassay_013824_20
Specimen euxassay_013824_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_21
TS23: facial ganglion Strong Single cells euxassay_013824_21
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_21
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_21
Specimen euxassay_013824_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Single cells euxassay_013824_22
TS23: facial ganglion Strong Single cells euxassay_013824_22
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_22
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_22
Specimen euxassay_013824_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Single cells euxassay_013824_23
TS23: cerebral cortex mantle layer Strong Single cells euxassay_013824_23
TS23: telencephalon mantle layer Strong Single cells euxassay_013824_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory