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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822811
Gene symbol: 9630041I06Rik
Gene name: RIKEN cDNA 9630041I06 gene
Probe: T40444
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_014173_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_09
Specimen euxassay_014173_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_014173_10
Specimen euxassay_014173_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_014173_11
Specimen euxassay_014173_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_014173_12
Specimen euxassay_014173_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_13
Specimen euxassay_014173_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_14
Specimen euxassay_014173_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_15
Specimen euxassay_014173_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_014173_16
Specimen euxassay_014173_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_17
Specimen euxassay_014173_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_014173_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_18
Specimen euxassay_014173_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_014173_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_19
Specimen euxassay_014173_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_014173_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/30/2025
MGI 6.24 		The Jackson Laboratory