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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822732
Gene symbol: Shtn1
Gene name: shootin 1
Probe: MGC clone 40679
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_001630_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Spotted euxassay_001630_01
TS23: stomach Moderate Regionally restricted euxassay_001630_01
TS23: cornea stroma Moderate Regionally restricted euxassay_001630_01
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_01
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_01
TS23: neural retina Strong Regionally restricted euxassay_001630_01
Specimen euxassay_001630_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_02
TS23: lung Strong Spotted euxassay_001630_02
TS23: stomach Moderate Regionally restricted euxassay_001630_02
TS23: cornea stroma Moderate Regionally restricted euxassay_001630_02
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_02
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_02
TS23: neural retina Strong Regionally restricted euxassay_001630_02
Specimen euxassay_001630_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_03
TS23: lung Strong Spotted euxassay_001630_03
TS23: vibrissa Moderate Regionally restricted euxassay_001630_03
TS23: stomach Moderate Regionally restricted euxassay_001630_03
TS23: cornea stroma Moderate Regionally restricted euxassay_001630_03
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_03
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_03
TS23: hindbrain Strong Uniform euxassay_001630_03
TS23: neural retina Strong Regionally restricted euxassay_001630_03
Specimen euxassay_001630_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_04
TS23: lung Strong Spotted euxassay_001630_04
TS23: vibrissa Moderate Regionally restricted euxassay_001630_04
TS23: stomach Moderate Regionally restricted euxassay_001630_04
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_04
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_04
TS23: hindbrain Strong Uniform euxassay_001630_04
TS23: midbrain Strong Uniform euxassay_001630_04
Specimen euxassay_001630_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_001630_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_05
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_05
TS23: lung Strong Spotted euxassay_001630_05
TS23: vibrissa Moderate Regionally restricted euxassay_001630_05
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_05
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_05
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_05
TS23: midbrain Strong Uniform euxassay_001630_05
TS23: hindbrain Strong Uniform euxassay_001630_05
Specimen euxassay_001630_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_001630_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_06
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_06
TS23: lung Strong Spotted euxassay_001630_06
TS23: vibrissa Moderate Regionally restricted euxassay_001630_06
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_06
TS23: stomach Moderate Regionally restricted euxassay_001630_06
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_06
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_06
TS23: midbrain Strong Uniform euxassay_001630_06
TS23: hindbrain Strong Uniform euxassay_001630_06
Specimen euxassay_001630_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_07
TS23: lung Strong Spotted euxassay_001630_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_07
TS23: midgut Strong Regionally restricted euxassay_001630_07
TS23: stomach Moderate Regionally restricted euxassay_001630_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_07
TS23: cervical ganglion Moderate Regionally restricted euxassay_001630_07
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_001630_07
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_07
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_07
TS23: spinal cord Strong Uniform euxassay_001630_07
TS23: midbrain Strong Uniform euxassay_001630_07
TS23: hindbrain Strong Uniform euxassay_001630_07
TS23: diencephalon Strong Uniform euxassay_001630_07
Specimen euxassay_001630_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_08
TS23: lung Strong Spotted euxassay_001630_08
TS23: midgut Strong Regionally restricted euxassay_001630_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_08
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_08
TS23: olfactory cortex mantle layer Strong Uniform euxassay_001630_08
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_08
TS23: diencephalon Strong Uniform euxassay_001630_08
TS23: hindbrain Strong Uniform euxassay_001630_08
TS23: midbrain Strong Uniform euxassay_001630_08
TS23: spinal cord Strong Uniform euxassay_001630_08
Specimen euxassay_001630_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_001630_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_09
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_09
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_09
TS23: midbrain Strong Uniform euxassay_001630_09
TS23: hindbrain Strong Uniform euxassay_001630_09
TS23: spinal cord Strong Uniform euxassay_001630_09
TS23: diencephalon Strong Uniform euxassay_001630_09
Specimen euxassay_001630_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Spotted euxassay_001630_10
TS23: midgut Strong Regionally restricted euxassay_001630_10
TS23: hindgut Strong Regionally restricted euxassay_001630_10
TS23: foregut-midgut junction Strong Regionally restricted euxassay_001630_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_10
TS23: thoracic ganglion Moderate Regionally restricted euxassay_001630_10
TS23: esophagus Moderate Regionally restricted euxassay_001630_10
TS23: bladder Strong Regionally restricted euxassay_001630_10
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_10
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_10
TS23: diencephalon Strong Uniform euxassay_001630_10
TS23: spinal cord Strong Uniform euxassay_001630_10
TS23: midbrain Strong Uniform euxassay_001630_10
TS23: hindbrain Strong Uniform euxassay_001630_10
Specimen euxassay_001630_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Spotted euxassay_001630_11
TS23: midgut Strong Regionally restricted euxassay_001630_11
TS23: hindgut Strong Regionally restricted euxassay_001630_11
TS23: foregut-midgut junction Strong Regionally restricted euxassay_001630_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_11
TS23: naris Moderate Regionally restricted euxassay_001630_11
TS23: trachea Moderate Regionally restricted euxassay_001630_11
TS23: bladder Strong Regionally restricted euxassay_001630_11
TS23: urethra Strong Regionally restricted euxassay_001630_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_11
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_11
TS23: spinal cord Strong Uniform euxassay_001630_11
TS23: midbrain Strong Uniform euxassay_001630_11
TS23: hindbrain Strong Uniform euxassay_001630_11
TS23: diencephalon Strong Uniform euxassay_001630_11
Specimen euxassay_001630_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Spotted euxassay_001630_12
TS23: midgut Strong Regionally restricted euxassay_001630_12
TS23: foregut-midgut junction Strong Regionally restricted euxassay_001630_12
TS23: hindgut Strong Regionally restricted euxassay_001630_12
TS23: naris Moderate Regionally restricted euxassay_001630_12
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_12
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_12
TS23: diencephalon Strong Uniform euxassay_001630_12
TS23: spinal cord Strong Uniform euxassay_001630_12
TS23: midbrain Strong Uniform euxassay_001630_12
TS23: hindbrain Strong Uniform euxassay_001630_12
Specimen euxassay_001630_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_13
TS23: lung Moderate Spotted euxassay_001630_13
TS23: midgut Strong Regionally restricted euxassay_001630_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_13
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_001630_13
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_13
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_13
TS23: diencephalon Strong Uniform euxassay_001630_13
TS23: spinal cord Strong Uniform euxassay_001630_13
TS23: midbrain Strong Uniform euxassay_001630_13
TS23: hindbrain Strong Uniform euxassay_001630_13
Specimen euxassay_001630_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_14
TS23: lung Strong Spotted euxassay_001630_14
TS23: midgut Strong Regionally restricted euxassay_001630_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_14
TS23: naris Moderate Regionally restricted euxassay_001630_14
TS23: cervical ganglion Moderate Regionally restricted euxassay_001630_14
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_14
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_14
TS23: hindbrain Strong Uniform euxassay_001630_14
TS23: midbrain Strong Uniform euxassay_001630_14
TS23: diencephalon Strong Uniform euxassay_001630_14
Specimen euxassay_001630_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_001630_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_15
TS23: lung Strong Spotted euxassay_001630_15
TS23: midgut Strong Regionally restricted euxassay_001630_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_15
TS23: naris Moderate Regionally restricted euxassay_001630_15
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_15
TS23: olfactory cortex mantle layer Strong Uniform euxassay_001630_15
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_15
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_15
TS23: diencephalon Strong Uniform euxassay_001630_15
TS23: midbrain Strong Uniform euxassay_001630_15
TS23: hindbrain Strong Uniform euxassay_001630_15
Specimen euxassay_001630_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_001630_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_001630_16
TS23: lung Strong Spotted euxassay_001630_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_16
TS23: midgut Strong Regionally restricted euxassay_001630_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_16
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_16
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_16
TS23: olfactory cortex marginal layer Strong Uniform euxassay_001630_16
TS23: olfactory cortex mantle layer Strong Uniform euxassay_001630_16
TS23: hindbrain Strong Uniform euxassay_001630_16
TS23: midbrain Strong Uniform euxassay_001630_16
TS23: diencephalon Strong Uniform euxassay_001630_16
Specimen euxassay_001630_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_001630_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_17
TS23: lung Strong Spotted euxassay_001630_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_17
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_17
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_17
TS23: diencephalon Strong Uniform euxassay_001630_17
TS23: midbrain Strong Uniform euxassay_001630_17
TS23: hindbrain Strong Uniform euxassay_001630_17
Specimen euxassay_001630_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_18
TS23: lung Strong Spotted euxassay_001630_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_001630_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_001630_18
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_18
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_18
TS23: diencephalon Strong Uniform euxassay_001630_18
TS23: hindbrain Strong Uniform euxassay_001630_18
TS23: midbrain Strong Uniform euxassay_001630_18
Specimen euxassay_001630_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_19
TS23: lung Strong Spotted euxassay_001630_19
TS23: vibrissa Moderate Regionally restricted euxassay_001630_19
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_19
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_19
TS23: hindbrain Strong Uniform euxassay_001630_19
Specimen euxassay_001630_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_20
TS23: lung Strong Spotted euxassay_001630_20
TS23: vibrissa Moderate Regionally restricted euxassay_001630_20
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_20
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_20
TS23: hindbrain Strong Uniform euxassay_001630_20
Specimen euxassay_001630_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_001630_21
TS23: vibrissa Moderate Regionally restricted euxassay_001630_21
TS23: cornea stroma Moderate Regionally restricted euxassay_001630_21
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_21
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_21
TS23: neural retina Strong Regionally restricted euxassay_001630_21
Specimen euxassay_001630_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea stroma Moderate Regionally restricted euxassay_001630_22
TS23: telencephalon mantle layer Strong Uniform euxassay_001630_22
TS23: telencephalon marginal layer Strong Uniform euxassay_001630_22
TS23: neural retina Strong Regionally restricted euxassay_001630_22
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory