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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822703
Gene symbol: Ptchd4
Gene name: patched domain containing 4
Probe: T40272
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_014092_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Single cells euxassay_014092_07
TS23: interdigital region between hindlimb digits 1 and 2 Moderate Regionally restricted euxassay_014092_07
TS23: interdigital region between hindlimb digits 2 and 3 Moderate Regionally restricted euxassay_014092_07
TS23: interdigital region between hindlimb digits 3 and 4 Moderate Regionally restricted euxassay_014092_07
TS23: interdigital region between hindlimb digits 4 and 5 Moderate Regionally restricted euxassay_014092_07
Specimen euxassay_014092_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_08
TS23: interdigital region between hindlimb digits 2 and 3 Weak Regionally restricted euxassay_014092_08
TS23: interdigital region between hindlimb digits 4 and 5 Weak Regionally restricted euxassay_014092_08
TS23: interdigital region between hindlimb digits 3 and 4 Weak Regionally restricted euxassay_014092_08
Specimen euxassay_014092_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_09
TS23: interdigital region between hindlimb digits 2 and 3 Weak Regionally restricted euxassay_014092_09
TS23: interdigital region between hindlimb digits 3 and 4 Weak Regionally restricted euxassay_014092_09
TS23: foot mesenchyme Weak Regionally restricted euxassay_014092_09
Specimen euxassay_014092_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_10
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_014092_10
Specimen euxassay_014092_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_11
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_11
Specimen euxassay_014092_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_12
Specimen euxassay_014092_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_13
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_014092_13
Specimen euxassay_014092_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Weak Single cells euxassay_014092_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_014092_14
Specimen euxassay_014092_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Single cells euxassay_014092_15
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_014092_15
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_014092_15
Specimen euxassay_014092_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_014092_16
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_014092_16
TS23: pons mantle layer Weak Single cells euxassay_014092_16
Specimen euxassay_014092_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Weak Single cells euxassay_014092_17
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_014092_17
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_014092_17
Specimen euxassay_014092_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_014092_18
TS23: pons mantle layer Weak Single cells euxassay_014092_18
Specimen euxassay_014092_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_014092_19
TS23: telencephalon mantle layer Weak Single cells euxassay_014092_19
Specimen euxassay_014092_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_014092_20
TS23: telencephalon mantle layer Moderate Single cells euxassay_014092_20
Specimen euxassay_014092_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: interdigital region between hindlimb digits 4 and 5 Weak Regionally restricted euxassay_014092_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory