About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:26186 Tissier-Seta JP, et al., Barx1, a new mouse homeodomain transcription factor expressed in cranio-facial ectomesenchyme and the stomach. Mech Dev. 1995 May;51(1):3-15
Assay type: RNA in situ
MGI Accession ID: MGI:4462846
Gene symbol: Barx1
Gene name: BarH-like homeobox 1
Probe: pab80PH
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 4A,B: embryonic day 11.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS19: mandibular process Strong Regionally restricted 4A/B Expression is in the dorsal portions.
TS19: maxillary process Strong Regionally restricted 4A/B Expression is in the dorsal portions.
TS19: 1st branchial arch Strong Regionally restricted 4A/B Expression is in the mesenchyme surrounding the first branchial pouch.
TS19: fronto-nasal process Present 4A/B Expression is in mesenchyme surrounding the forming olfactory epithelium and is absent around the mucosal epithelium of the nasal pits.
TS19: 2nd branchial arch Weak Regionally restricted 4A/B Expression is in the center.
TS19: Meckel's cartilage pre-cartilage condensation Absent 4A/B

Specimen 4C,D: embryonic day 11.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS19: maxillary process Strong Regionally restricted 4C/D Expression is in the primary palate.
TS19: 1st branchial pouch Present Regionally restricted 4C/D Expression is in the mesenchyme surrounding the first branchial pouch.
TS19: Meckel's cartilage pre-cartilage condensation Absent 4C/D

Specimen 4E,F: embryonic day 12.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: primary palate Present 4E/F
TS20: head mesenchyme Present Regionally restricted 4E/F Expression is in the mesenchyme surrounding the first branchial pouch.
TS20: fronto-nasal process mesenchyme Present 4E/F Expression is in mesenchyme surrounding the forming olfactory epithelium and is absent around the mucosal epithelium of the nasal pits.

Specimen 4G,H: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: primary palate Strong 4G/H
TS20: head mesenchyme Present Regionally restricted 4G/H Expression is in the mesenchyme surrounding the first branchial pouch.
TS20: fronto-nasal process mesenchyme Present Regionally restricted 4G/H Expression is in mesenchyme surrounding the forming olfactory epithelium and is absent around the mucosal epithelium of the nasal pits.
TS20: mandibular process Present Regionally restricted 4G/H Expression is dorsal, absent in ventral areas and muscle.

Specimen 5A,B: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 5A/B Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS20: central nervous system ganglion Absent 5A/B Absent in geniculate ganglion.

Specimen 5C,D: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 5C/D Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS20: superior vagus ganglion Absent 5C/D

Specimen 5E,F: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 5E/F Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS20: Meckel's cartilage Absent 5E/F
TS20: superior vagus ganglion Absent 5E/F

Specimen 5G,H: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 5G/H Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS20: superior vagus ganglion Absent 5G/H

Specimen 5I,J: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: mandibular process Present Regionally restricted 5I/J Expression is in the area surrounding the molar tooth germ.
TS20: maxillary process Present Regionally restricted 5I/J Expression is in the area surrounding the molar tooth germ.
TS20: superior vagus ganglion Absent 5I/J

Specimen 5K,L: embryonic day 12.0 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS20: mandibular process Present Regionally restricted 5K/L Absent around the incisor tooth germ. Expression is dorsal, absent in ventral areas and muscle.
TS20: maxillary process Present Regionally restricted 5K/L

Specimen 6A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head mesenchyme Present Regionally restricted 6A Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS21: middle ear mesenchyme Present Regionally restricted 6A Expression is in mesenchyme surrounding the future tubo-tympanic recess.
TS21: Meckel's cartilage Absent 6A
TS21: mandible Absent 6A

Specimen 6B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head mesenchyme Present Regionally restricted 6B Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS21: nose Present Regionally restricted 6B Expression is in mesenchyme surrounding the olfactory epithelium.
TS21: lower jaw mesenchyme Present 6B
TS21: palatal shelf Present 6B
TS21: upper jaw mesenchyme Present 6B
TS21: vomeronasal organ Present 6B
TS21: Meckel's cartilage Absent 6B

Specimen 6C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head mesenchyme Present Regionally restricted 6C Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS21: nose Present Regionally restricted 6C Expression is in mesenchyme surrounding the olfactory epithelium.
TS21: tooth mesenchyme Present Regionally restricted 6C Expression is in the condensed mesenchyme of the future dental papilla and follicle, and the mesenchyme of the surrounding area.
TS21: Meckel's cartilage Absent 6C

Specimen 6D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head mesenchyme Present Regionally restricted 6D Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS21: lower jaw mesenchyme Present 6D
TS21: palatal shelf Present 6D
TS21: upper jaw mesenchyme Present 6D
TS21: tongue muscle Weak Regionally restricted 6D Some muscles at the base of the tongue were sparsely labeled.
TS21: Meckel's cartilage Absent 6D

Specimen 6E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head mesenchyme Present Regionally restricted 6E Expression is in the mesenchymal derivatives of the first and second branchial arches.
TS21: lower jaw mesenchyme Present 6E
TS21: palatal shelf Present 6E
TS21: upper jaw mesenchyme Present 6E
TS21: submandibular gland primordium mesenchyme Present 6E
TS21: Meckel's cartilage Absent 6E

Specimen 7A,B: embryonic day 11.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS19: mandibular process Present Regionally restricted 7A/B Expression is in the loose mesenchyme in the region of the thickened dental epithelium of the first upper molar.
TS19: maxillary process Present Regionally restricted 7A/B Expression is in the loose mesenchyme in the region of the thickened dental epithelium of the first upper molar.
TS19: oral epithelium Absent 7A/B

Specimen 7C,D: embryonic day 13.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS21: tooth mesenchyme Present Regionally restricted 7C/D Expression is in the condensed mesenchyme of the future dental papilla and follicle, and the mesenchyme of the surrounding area.

Specimen 7E,F: embryonic day 14.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS22: upper jaw molar dental papilla Strong 7E/F
TS22: upper jaw molar enamel organ Absent 7E/F

Specimen 7G,H: embryonic day 16.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS24: upper jaw molar dental papilla Strong 7G/H
TS24: soft palate Weak 7G/H

Specimen 7I,J: embryonic day 16.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS24: incisor Absent 7I/J

Specimen 8A,B: embryonic day 11.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS19: ventral mesogastrium Very strong 8A/B
TS19: stomach Very strong Regionally restricted 8A/B Expression is in the stomach wall.
TS19: peritoneal component Present Regionally restricted 8A/B Expression is in the gastric peritoneum and the hepatic peritoneum facing the stomach.
TS19: pancreas primordium Absent 8A/B

Specimen 8C,D: embryonic day 13.5 (more )
Note: brightfield/darkfield pair
Structure Level Pattern Image Note
TS21: stomach mesenchyme Very strong 8C/D
TS21: peritoneal component Present Regionally restricted 8C/D Expression is in the gastric peritoneum and the hepatic peritoneum facing the stomach.
TS21: stomach epithelium Absent 8C/D Absent in gastric epithelium.

Specimen Not shown E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forelimb bud Present Regionally restricted Expression is proximal.
TS19: hindlimb bud Present Regionally restricted Expression is proximal.

Specimen Not shown E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: forelimb Present Regionally restricted Expression is proximal.
TS21: hindlimb Present Regionally restricted Expression is proximal.

Specimen Not shown E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: stomach Weak


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
05/14/2024
MGI 6.23
The Jackson Laboratory