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Gene Expression Data
Assay Details
Assay
Reference: J:157819 Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
Assay type: RNA in situ
MGI Accession ID: MGI:4450829
Gene symbol: Parm1
Gene name: prostate androgen-regulated mucin-like protein 1
Probe: UI-M-AO1-aei-h-02-0-UI.s1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: These specimens were also hybridized with a fluorescein-labeled Shh probe MGI:2110655; detected with TBT/BCIP. The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Results
Specimen 9130213B05Rik - line 39 - E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon lateral wall mantle layer Moderate Non-Uniform 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal There is moderate staining in the MZ of the dorsal POA & the AVH. Staining is either absent or ubiquitous in the MZ of the dorsal thalamus, prethalamus, ventral POA, PVH, VMH & ARH nuclei, anterior & posterior IDs, premam, mam & supramam zones & TT.
TS19: telencephalon mantle layer Ambiguous 9130213B05Rik-Shh E11.5-coronal , 9130213B05Rik-Shh E11.5-coronal-2 Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone and cortical plate of the cerebral cortex and in the mantle zone of the ganglionic eminences.
TS19: telencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex and the ganglionic eminences.
TS19: diencephalon lateral wall ventricular layer Ambiguous 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus, the prethalamus, dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH, the anterior and posterior IDs, the premam, mam and supramam zones and the TT.
Specimen 9130213B05Rik - line 39 - E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS20: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS20: cortical plate Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS20: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS20: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones and the TT.
TS20: ganglionic eminence Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular and mantle zones of the ganglionic eminences.
TS20: hypothalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 There is strong staining in the mantle zone of the AVH and moderate staining in the dorsal POA. Staining is either absent or ubiquitous in the mantle zone of the ventral POA, the PVH, VMH and ARH nuclei and anterior and posterior IDs.
TS20: thalamus mantle layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus and prethalamus.
TS20: thalamus ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.
TS20: hypothalamus ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
Specimen 9130213B05Rik - line 39 - E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS22: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS22: cortical plate Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS22: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS22: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones and the TT.
TS22: ganglionic eminence Weak Non-Uniform 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 There is weak staining in the mantle zone of the ganglionic eminences. Staining is either absent or ubiquitous in the ventricular zone of the ganglionic eminences.
TS22: hypothalamus ventricular layer Strong Non-Uniform 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 There is strong staining in the ventricular zone of the PVH nucleus and the AVH. Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the VMH and ARH nuclei and anterior and posterior IDs.
TS22: thalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal There is strong staining in the mantle zone of the prethalamus. Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus.
TS22: hypothalamus mantle layer Ambiguous 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS22: thalamus ventricular layer Moderate Non-Uniform 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal There is moderate staining in the ventricular zone of the prethalamus. Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus.
Specimen 9130213B05Rik - line 39 - E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS24: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS24: cortical plate Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS24: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones.
TS24: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones.
TS24: ganglionic eminence Moderate Non-Uniform 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal There is moderate staining in the mantle zone of the ganglionic eminences. Staining is either absent or ubiquitous in the ventricular zone of the ganglionic eminences.
TS24: hypothalamus ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, SCH, DMH, VMH and ARH nuclei, the AVH, the DAH and the PH.
TS24: thalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal There is strong staining in the mantle zone of the prethalamus. Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus.
TS24: hypothalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 There is strong staining in the MZ of the PVH nucleus and the DAH, moderate staining in the SCH nucleus and weak staining in the dorsal and ventral POAs. Staining is either absent or ubiquitous in the MZ of the AVH, DMH, VMH and ARH nuclei and the PH.
TS24: thalamus ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.
Specimen 9130213B05Rik - line 49 - E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon lateral wall mantle layer Weak Non-Uniform 9130213B05Rik-Shh E11.5-coronal , 9130213B05Rik-Shh E11.5-coronal-2 There is weak staining in the MZ of the anterior & posterior IDs. Staining is either absent or ubiquitous in the MZ of the dorsal thalamus, prethalamus, dorsal & ventral POAs, the PVH, VMH & ARH nuclei, the AVH, the premam, mam & supramam zones & the TT.
TS19: diencephalon lateral wall ventricular layer Strong Non-Uniform 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal There is strong staining in the VZ of the PVH nucleus. Staining is either absent or ubiquitous in the VZ of the dorsal thalamus, prethalamus, dorsal & ventral POAs, VMH & ARH nuclei, the AVH, anterior & posterior IDs, premam, mam & supramam zones & TT.
TS19: telencephalon mantle layer Ambiguous 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone and cortical plate of the cerebral cortex and in the mantle zone of the ganglionic eminences.
TS19: telencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E11.5-coronal-2 , 9130213B05Rik-Shh E11.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex and the ganglionic eminences.
Specimen 9130213B05Rik - line 49 - E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS20: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS20: cortical plate Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS20: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS20: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones and the TT.
TS20: ganglionic eminence Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular and mantle zones of the ganglionic eminences.
TS20: hypothalamus ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS20: thalamus mantle layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus and prethalamus.
TS20: thalamus ventricular layer Ambiguous 9130213B05Rik-Shh E12.5-coronal-2 , 9130213B05Rik-Shh E12.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.
TS20: hypothalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E12.5-coronal , 9130213B05Rik-Shh E12.5-coronal-2 There is strong staining in the MZ of the ventral POA, PVH nucleus and the AVH and weak, scattered staining in the anterior and posterior IDs. Staining is either absent or ubiquitous in the MZ of the dorsal POA and the VMH and ARH nuclei.
Specimen 9130213B05Rik - line 49 - E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS22: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS22: cortical plate Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS22: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS22: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones and the TT.
TS22: hypothalamus mantle layer Strong Non-Uniform 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 There is strong staining in the mantle zone of the dorsal POA, PVH nucleus, the AVH and anterior and posterior IDs. Staining is either absent or ubiquitous in the mantle zone of the ventral POA and VMH and ARH nuclei.
TS22: thalamus mantle layer Moderate Non-Uniform 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal There is moderate staining in the mantle zone of the prethalamus. Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus.
TS22: thalamus ventricular layer Moderate Non-Uniform 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal There is moderate staining in the ventricular zone of the prethalamus. Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus.
TS22: ganglionic eminence Ambiguous 9130213B05Rik-Shh E14.5-coronal , 9130213B05Rik-Shh E14.5-coronal-2 Staining is either absent or ubiquitous in the ventricular and mantle zones of the ganglionic eminences.
TS22: hypothalamus ventricular layer Ambiguous 9130213B05Rik-Shh E14.5-coronal-2 , 9130213B05Rik-Shh E14.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
Specimen 9130213B05Rik - line 49 - E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS24: cerebral cortex ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the cerebral cortex.
TS24: cortical plate Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS24: diencephalon mantle layer Ambiguous 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones.
TS24: diencephalon ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones.
TS24: hypothalamus mantle layer Very strong Non-Uniform 9130213B05Rik-Shh E16.5-coronal-2 , 9130213B05Rik-Shh E16.5-coronal There is very strong staining in the MZ of the PVH nucleus & the DAH, moderate staining in the PH & weak staining in the SCH nucleus. Staining is either absent or ubiquitous in the MZ of the dorsal & ventral POAs, the AVH & DMH, VMH & ARH nuclei.
TS24: hypothalamus ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, SCH, DMH, VMH and ARH nuclei, the AVH, the DAH and the PH.
TS24: thalamus ventricular layer Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.
TS24: ganglionic eminence Ambiguous 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 Staining is either absent or ubiquitous in the ventricular and mantle zones of the ganglionic eminences.
TS24: thalamus mantle layer Very strong Non-Uniform 9130213B05Rik-Shh E16.5-coronal , 9130213B05Rik-Shh E16.5-coronal-2 There is very strong staining in the mantle zone of the prethalamus. Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus.
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