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Gene Expression Data
Assay Details
Assay
Reference: J:157819 Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
Assay type: RNA in situ
MGI Accession ID: MGI:4450723
Gene symbol: Spata13
Gene name: spermatogenesis associated 13
Probe: UI-M-CG0p-bex-f-06-0-UI.s1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: These specimens were also hybridized with a fluorescein-labeled Shh probe MGI:2110655; detected with TBT/BCIP. The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Results
Specimen Spata13 - E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon lateral wall mantle layer Ambiguous Spata13-Shh E11.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus, prethalamus, dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH, the anterior and posterior IDs, the premam, mam and supramam zones and the TT.
TS19: diencephalon lateral wall ventricular layer Moderate Spata13-Shh E11.5_coronal There is moderate staining in the ventricular zone of the dorsal thalamus, the prethalamus, dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH, the anterior and posterior IDs, the premam, mam and supramam zones and the TT.
TS19: telencephalon mantle layer Ambiguous Spata13-Shh E11.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone and cortical plate of the cerebral cortex and in the mantle zone of the ganglionic eminences.
TS19: telencephalon ventricular layer Moderate Spata13-Shh E11.5_coronal There is moderate staining in the ventricular zone of the cerebral cortex and the ganglionic eminences.

Specimen Spata13 - E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex intermediate zone Ambiguous Spata13-Shh E12.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS20: cerebral cortex ventricular layer Strong Spata13-Shh E12.5_coronal There is strong staining in the ventricular zone of the cerebral cortex.
TS20: cortical plate Ambiguous Spata13-Shh E12.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS20: ganglionic eminence Strong Non-Uniform Spata13-Shh E12.5_coronal There is strong staining in the ventricular zone of the ganglionic eminences. Staining is either absent or ubiquitous in the mantle zone of the ganglionic eminences.
TS20: hypothalamus mantle layer Ambiguous Spata13-Shh E12.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, PVH nucleus and the AVH.
TS20: hypothalamus ventricular layer Strong Spata13-Shh E12.5_coronal There is strong staining in the ventricular zone of the dorsal and ventral POAs, PVH nucleus and the AVH.
TS20: thalamus mantle layer Ambiguous Spata13-Shh E12.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus and prethalamus.
TS20: thalamus ventricular layer Strong Spata13-Shh E12.5_coronal There is strong staining in the ventricular zone of the dorsal thalamus and prethalamus.

Specimen Spata13 - E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex intermediate zone Ambiguous Spata13-Shh E14.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS22: cerebral cortex ventricular layer Strong Spata13-Shh E14.5_coronal There is strong staining in the ventricular zone of the cerebral cortex.
TS22: cortical plate Ambiguous Spata13-Shh E14.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS22: diencephalon mantle layer Ambiguous Spata13-Shh E14.5_coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS22: diencephalon ventricular layer Strong Spata13-Shh E14.5_coronal There is strong staining in the ventricular zone of the premam, mam and supramam zones and the TT.
TS22: ganglionic eminence Strong Spata13-Shh E14.5_coronal There is strong staining in the ventricular and mantle zones of the ganglionic eminences.
TS22: hypothalamus mantle layer Ambiguous Spata13-Shh E14.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS22: hypothalamus ventricular layer Strong Spata13-Shh E14.5_coronal There is strong staining in the ventricular zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS22: thalamus mantle layer Ambiguous Spata13-Shh E14.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus and prethalamus.
TS22: thalamus ventricular layer Strong Spata13-Shh E14.5_coronal There is strong staining in the ventricular zone of the dorsal thalamus and prethalamus.

Specimen Spata13 - E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Ambiguous Spata13-Shh E16.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS24: cerebral cortex ventricular layer Moderate Spata13-Shh E16.5_coronal There is moderate staining in the ventricular zone of the cerebral cortex.
TS24: cortical plate Ambiguous Spata13-Shh E16.5_coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS24: diencephalon mantle layer Ambiguous Spata13-Shh E16.5_coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones.
TS24: diencephalon ventricular layer Moderate Spata13-Shh E16.5_coronal There is moderate staining in the ventricular zone of the premam, mam and supramam zones.
TS24: ganglionic eminence Moderate Spata13-Shh E16.5_coronal There is moderate staining in the ventricular and mantle zones of the ganglionic eminences.
TS24: hypothalamus mantle layer Ambiguous Spata13-Shh E16.5_coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, SCH, DMH, VMH and ARH nuclei, the AVH, the DAH and the PH.
TS24: hypothalamus ventricular layer Moderate Spata13-Shh E16.5_coronal There is moderate staining in the ventricular zone of the dorsal and ventral POAs, the PVH, SCH, DMH, VMH and ARH nuclei, the AVH, the DAH and the PH.
TS24: thalamus mantle layer Weak Non-Uniform Spata13-Shh E16.5_coronal There is weak staining in the mantle zone of the prethalamus. Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus.
TS24: thalamus ventricular layer Moderate Spata13-Shh E16.5_coronal There is moderate staining in the ventricular zone of the dorsal thalamus and prethalamus.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory