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Gene Expression Data
Assay Details
Assay
Reference: J:22300 Wright E, et al., The Sry-related gene Sox9 is expressed during chondrogenesis in mouse embryos. Nat Genet. 1995 Jan;9(1):15-20
Assay type: RNA in situ
MGI Accession ID: MGI:3775490
Gene symbol: Sox9
Gene name: SRY (sex determining region Y)-box 9
Probe: Sox9 cDNA3
Probe preparation: Antisense RNA
Results
Specimen 2a: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mesenchyme Present 2a
TS15: head mesenchyme Present 2a
TS15: otocyst Present 2a
TS15: somite Present Regionally restricted 2a Expression in rostral somites.
TS15: surface ectoderm Present Regionally restricted 2a Expression in a scattered population of surface ectodermal cells overlying the spinal cord.

Specimen 2b: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: nose Present Regionally restricted 2b Expression in nasal cartilage
TS16: somite Present Regionally restricted 2b Expression in a discrete population of cells within the caudal somites
TS16: future forebrain Present Regionally restricted 2b Expression in ventricular cells of the forebrain.

Specimen 2c: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial arch Present 2c
TS17: otocyst Present 2c
TS17: trunk sclerotome Present Regionally restricted 2c Expression in migrating sclerotomal cells.
TS17: limb mesenchyme Present Regionally restricted 2c Expression in limb bud cartilage condensations
TS17: nose Present Regionally restricted 2c Authors report expression in nasal cartilage.

Specimen 2e: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: future arm mesenchyme Present Regionally restricted 2e Expression in the limb bud cartilage condensations, corresponding to radius, ulna and footplate.
TS19: handplate mesenchyme Present Regionally restricted 2e Expression in the limb bud cartilage condensations, corresponding to radius, ulna and footplate.
TS19: skeleton Present Regionally restricted 2e Expression in cartilage condensations corresponding to the scapula and pelvis.

Specimen 2f: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cranium Present Regionally restricted 2f Authors report expression in most skeletal structures, including the developing vertebrae, ribs, long bones, digits and cranial cartilage.
TS20: skeleton Present Regionally restricted 2f Authors report expression in most skeletal structures, including the developing vertebrae, ribs, long bones, digits and cranial cartilage.
TS20: digit mesenchyme Present 2f Authors report expression in most skeletal structures, including the developing vertebrae, ribs, long bones, digits and cranial cartilage.
TS20: rib pre-cartilage condensation Present 2f Authors report expression in most skeletal structures, including the developing vertebrae, ribs, long bones, digits and cranial cartilage.
TS20: vertebral cartilage condensation Present 2f Authors report expression in most skeletal structures, including the developing vertebrae, ribs, long bones, digits and cranial cartilage.

Specimen 2h: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord ventricular layer Present 2h Expression in ventricular cells of the spinal cord.

Specimen 2i: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: axial skeleton tail region Present Regionally restricted 2i Expression restricted to the tips of the digits, ribs, and to the tail tip vertebra;
TS21: limb digit Present Regionally restricted 2i Expression restricted to the tips of the digits, ribs, and to the tail tip vertebra;
TS21: rib cartilage condensation Present Regionally restricted 2i Expression restricted to the tips of the digits, ribs, and to the tail tip vertebra;
TS21: rib pre-cartilage condensation Present Regionally restricted 2i Expression restricted to the tips of the digits, ribs, and to the tail tip vertebra;
TS21: digit mesenchyme Present Regionally restricted 2i No expression in more mature cartilage., such as the long bones of the limbs and proximal parts of the digits.
TS21: limb cartilage condensation Present Regionally restricted 2i No expression in more mature cartilage., such as the long bones of the limbs and proximal parts of the digits.
TS21: vibrissa Present 2i Expression in the vibrissae.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory