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Gene Expression Data
Assay Details
Assay
Reference: J:105875 Soma K, et al., Expression of mouse Coiled-coil-DIX1 (Ccd1), a positive regulator of Wnt signaling, during embryonic development. Gene Expr Patterns. 2006 Mar;6(3):325-30
Assay type: RNA in situ
MGI Accession ID: MGI:3620756
Gene symbol: Dixdc1
Gene name: DIX domain containing 1
Probe: pan-Ccd1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 6.5 (more )
Note: Early streak stage.
Structure Level Pattern Image Note
TS9: embryo Absent 1A
Specimen 1B: embryonic day 7.5 (more )
Note: Late streak stage.
Structure Level Pattern Image Note
TS11: node Present 1B
Specimen 1C: embryonic day 7.5 (more )
Note: Neural plate stage.
Structure Level Pattern Image Note
TS11: node Present 1C
Specimen 1D: embryonic day 7.5 (more )
Note: Neural plate stage.
Structure Level Pattern Image Note
TS11: node Present 1D
Specimen 1E: embryonic day 8.0 (more )
Note: Headfold stage.
Structure Level Pattern Image Note
TS12: embryo Present 1E Expression extends anteriorly from the node.
TS12: future spinal cord neural plate Present 1E
Specimen 1F: embryonic day 8.0 (more )
Note: Headfold stage.
Structure Level Pattern Image Note
TS12: primitive streak Strong Regionally restricted 1F Expression is at the node.
Specimen 1G: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present 1G
TS13: somite Present 1G
TS13: trunk mesenchyme Present 1G
Specimen 1H: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present 1H
TS13: trunk mesenchyme Present 1H
Specimen 1I: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present 1I
TS13: trunk mesenchyme Present 1I
TS13: future brain Present Regionally restricted 1I Expression is in the dorsal portion.
Specimen 1J: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present 1J
TS13: trunk mesenchyme Present 1J
Specimen 1K: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: head mesenchyme Strong Regionally restricted 1K Expression in the cephalic mesenchyme is stronger in the rostral region.
TS15: branchial arch Present 1K
TS15: forelimb bud Present 1K
TS15: tail Present 1K
Specimen 1L: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: head mesenchyme Strong Regionally restricted 1L Expression in the cephalic mesenchyme is stronger in the rostral region.
TS15: branchial arch Present 1L
Specimen 1M: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: head mesenchyme Strong Regionally restricted 1M Expression in the cephalic mesenchyme is stronger in the rostral region.
TS15: branchial arch Present 1M
Specimen 2A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube lateral wall Present Regionally restricted 2A Expression is in motor neurons and the dorsal portion.
Specimen 2B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: dorsal root ganglion Present 2B
TS19: neural tube basal columns Present 2B
TS19: neural tube alar columns Present Regionally restricted 2B Expression is in commissural neurons.
TS19: neural tube ventricular layer Present Regionally restricted 2B Expression is in the dorsal and ventral one-third of the ventricular zone.
Specimen 2C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Present 2C
TS20: spinal cord mantle layer Present 2C
TS20: spinal cord ventricular layer Present 2C
Specimen 2D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: dorsal root ganglion Present Uniform 2D
TS22: spinal cord Present Uniform 2D
Specimen 2E: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: spinal cord Present Regionally restricted 2E Expression is in gray matter, scarcely in white matter.
TS25: dorsal root ganglion Present 2E
Specimen 3A: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain mantle layer Present 3A
TS19: diencephalon Present Single cells 3A
TS19: midbrain Present Single cells 3A
TS19: head mesenchyme Strong 3A
Specimen 3B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain mantle layer Present 3B
TS19: diencephalon Present Single cells 3B
TS19: midbrain Present Single cells 3B
TS19: head mesenchyme Strong 3B
Specimen 3C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain mantle layer Present 3C
TS19: diencephalon Present Single cells 3C
TS19: midbrain Present Single cells 3C
TS19: acoustic ganglion Strong 3C
TS19: facial ganglion Strong 3C
TS19: trigeminal ganglion Strong 3C
Specimen 3D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain mantle layer Present 3D
TS19: diencephalon Present Single cells 3D
TS19: midbrain Present Single cells 3D
TS19: nasal process Present 3D
TS19: tongue Present 3D
Specimen 3E: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain mantle layer Present 3E
TS19: diencephalon Present Single cells 3E
TS19: midbrain Present Single cells 3E
TS19: acoustic ganglion Strong 3E
TS19: facial ganglion Strong 3E
TS19: trigeminal ganglion Strong 3E
TS19: nasal process Present 3E
TS19: tongue Present 3E
Specimen 3F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hindbrain mantle layer Strong 3F
TS20: diencephalon Strong 3F
TS20: midbrain Strong 3F
TS20: head mesenchyme Present 3F
Specimen 3G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hindbrain mantle layer Strong 3G
TS20: diencephalon Strong 3G
TS20: midbrain Strong 3G
TS20: head mesenchyme Present 3G
Specimen 3H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hindbrain mantle layer Strong 3H
TS20: diencephalon Strong 3H
TS20: midbrain Strong 3H
TS20: facial ganglion Strong 3H
TS20: trigeminal ganglion Strong 3H
TS20: vestibulo-cochlear ganglion Strong 3H
Specimen 3I: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hindbrain mantle layer Strong 3I
TS20: diencephalon Strong 3I
TS20: midbrain Strong 3I
TS20: facial ganglion Strong 3I
TS20: trigeminal ganglion Strong 3I
TS20: vestibulo-cochlear ganglion Strong 3I
TS20: nasal process Present 3I
TS20: tongue Present 3I
Specimen 3J: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hindbrain mantle layer Strong 3J
TS20: diencephalon Strong 3J
TS20: midbrain Strong 3J
TS20: nasal process Present 3J
TS20: tongue Present 3J
Specimen 3K: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present 3K
TS22: thalamus Present 3K
Specimen 3L: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present 3L
TS22: ganglionic eminence Present 3L
TS22: thalamus Present Regionally restricted 3L Expression is in the dorsal thalamus.
Specimen 3M: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: facial ganglion Strong 3M
TS22: trigeminal ganglion Strong 3M
TS22: vestibulo-cochlear ganglion Strong 3M
TS22: hypothalamus Present 3M
TS22: retina Present 3M
Specimen 3N: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: vomeronasal organ epithelium Present 3N
Specimen Not Shown: embryonic day 14.5 (more )
Note: Cap stage of tooth development.
Structure Level Pattern Image Note
TS22: dental papilla Present Cap stage of tooth development.
Specimen 4A: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: brain Strong Uniform 4A
Specimen 4B: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: brain Strong Uniform 4B
Specimen 4C: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: mandible Strong Regionally restricted 4C Expression is in the chondrocytes and perichondrium.
TS25: brain Strong Uniform 4C
Specimen 4D: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: mandible Strong Regionally restricted 4D Expression is in the chondrocytes and perichondrium.
TS25: brain Strong Uniform 4D
Specimen 4E: embryonic day 17.5 (more )
Note: Bell stage of tooth development.
Structure Level Pattern Image Note
TS25: dental papilla Present 4E Bell stage of tooth development.
TS25: brain Strong Uniform 4E
Specimen 4F: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: lens equatorial epithelium Present 4F
TS25: retina inner nuclear layer Present 4F
Specimen 4G: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: saccule Present Regionally restricted 4G Expression is in the macula.
Specimen 4H: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cochlea Present Regionally restricted 4H Expression is in the stria vascularis.
TS25: organ of Corti Present 4H
Specimen 4I: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: nasal cavity epithelium Present 4I
TS25: nasal septum Present Regionally restricted 4I Expression is in serous glands.
Specimen 5A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung Present 5A Difffuse expression.
TS20: rib pre-cartilage condensation Strong Regionally restricted 5A Expression is in the chondrocytes and perichondrium.
Specimen 5B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: gonad Present 5B
TS20: stomach epithelium Present 5B
TS20: sympathetic ganglion Present 5B
Specimen 5C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forelimb mesenchyme Strong 5C
Specimen 5D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lung mesenchyme Present 5D
TS22: rib cartilage condensation Strong Regionally restricted 5D Expression is in the chondrocytes and perichondrium.
TS22: vertebral cartilage condensation Strong Regionally restricted 5D Expression is in the chondrocytes and perichondrium.
Specimen 5E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: autonomic ganglion Present 5E
TS22: gonad Present 5E
TS22: paraganglion of Zuckerkandl Present 5E
TS22: stomach epithelium Present 5E
TS22: sympathetic ganglion Present 5E
TS22: metanephros Present 5E Diffuse expression.
TS22: vertebral cartilage condensation Strong Regionally restricted 5E Expression is in the chondrocytes and perichondrium.
Specimen 5F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: limb cartilage condensation Strong Regionally restricted 5F Expression is in the chondrocytes and perichondrium.
Specimen 5G: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: lung epithelium Present Regionally restricted 5G Expression is in the epithelium of the terminal bronchi.
Specimen 5H: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: autonomic ganglion Present 5H
TS25: celiac ganglion Present 5H
TS25: glomerular tuft Present 5H
TS25: medullary tubule Present 5H
TS25: sympathetic ganglion Present 5H
Specimen 5I: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: hypogastric plexus Present 5I
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory