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Gene Expression Data
Assay Details
Assay
Reference: J:103446 McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
Assay type: RNA in situ
MGI Accession ID: MGI:3618082
Gene symbol: Sf3a3
Gene name: splicing factor 3a, subunit 3
Probe: Sf3a3 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The results of this assay were listed in Additional File 3, Sf3a3.
Results
Specimen E13.5: embryonic day 13.5 (more )
Note: Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS21: cerebral cortex Present R3771-11 Expression was detected in precortical tissue.
TS21: brain ventricular layer Present R3771-11
TS21: corpus striatum Present R3771-11
TS21: hindbrain Present R3771-11
TS21: olfactory epithelium Present R3771-11
TS21: retina Present R3771-11
TS21: spinal cord Present R3771-11
TS21: central nervous system ganglion Ambiguous R3771-11 Authors indicate that there was either ubiquitous or background expression.
Specimen P0: postnatal day 0 (more )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Structure Level Pattern Image Note
TS27: cerebral cortex Present R3771-21 , R3771-23 , R3771-22
TS27: hippocampus Present R3771-21 , R3771-23 , R3771-22
TS27: hypothalamus Present R3771-21 , R3771-23 , R3771-22
TS27: main olfactory bulb Present R3771-21 , R3771-23 , R3771-22
TS27: midbrain Present R3771-21 , R3771-23 , R3771-22
TS27: olfactory epithelium Present R3771-21 , R3771-23 , R3771-22
TS27: retina Present R3771-21 , R3771-23 , R3771-22
TS27: thalamus Present R3771-21 , R3771-23 , R3771-22
TS27: trigeminal ganglion Present R3771-21 , R3771-23 , R3771-22
TS27: corpus striatum Ambiguous R3771-21 , R3771-22 , R3771-23 Authors indicate that there was either ubiquitous or background expression.
TS27: hindbrain Ambiguous R3771-21 , R3771-22 , R3771-23 Authors indicate that there was either ubiquitous or background expression.
TS27: spinal cord Ambiguous R3771-21 , R3771-22 , R3771-23 Authors indicate that there was either ubiquitous or background expression.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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