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Gene Expression Data
Assay Details
Assay
Reference: J:103446 McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
Assay type: RNA in situ
MGI Accession ID: MGI:3617995
Gene symbol: Crnkl1
Gene name: crooked neck pre-mRNA splicing factor 1
Probe: Crnkl1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The results of this assay were listed in Additional File 3, Crnkl1.
Results
Specimen E13.5: embryonic day 13.5 (more )
Note: Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS21: cerebral cortex Present R3672-11 Expression was detected in precortical tissue.
TS21: brain ventricular layer Present R3672-11
TS21: corpus striatum Present R3672-11
TS21: hindbrain Present R3672-11
TS21: olfactory epithelium Present R3672-11
TS21: spinal cord Present R3672-11
TS21: central nervous system ganglion Ambiguous R3672-11 Authors indicate that there was either ubiquitous or background expression.
TS21: retina Ambiguous R3672-11 Authors indicate that there was either ubiquitous or background expression.
Specimen P0: postnatal day 0 (more )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Structure Level Pattern Image Note
TS27: cerebral cortex Present R3672-21 , R3672-22
TS27: hindbrain Present R3672-21 , R3672-22
TS27: hippocampus Present R3672-21 , R3672-22
TS27: corpus striatum Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: hypothalamus Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: main olfactory bulb Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: midbrain Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: olfactory epithelium Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: retina Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: spinal cord Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: thalamus Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
TS27: trigeminal ganglion Ambiguous R3672-22 , R3672-21 Authors indicate that there was either ubiquitous or background expression.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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