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Gene Expression Data
Assay Details
Assay
Reference: J:103446 McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
Assay type: RNA in situ
MGI Accession ID: MGI:3617981
Gene symbol: Prpf6
Gene name: pre-mRNA splicing factor 6
Probe: 2610031L17Rik cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The results of this assay were listed in Additional File 3, 2610031L17Rik.
Results
Specimen E13.5: embryonic day 13.5 (more )
Note: Authors indicate that there was restricted expression in the nervous system with distinguishable expression in non-neural tissue.
Structure Level Pattern Image Note
TS21: cerebral cortex Present R3722-11 Expression was detected in precortical tissue.
TS21: brain ventricular layer Present R3722-11
TS21: central nervous system ganglion Present R3722-11
TS21: corpus striatum Present R3722-11
TS21: hindbrain Present R3722-11
TS21: olfactory epithelium Present R3722-11
TS21: retina Present R3722-11
TS21: spinal cord Present R3722-11
Specimen P0: postnatal day 0 (more )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Structure Level Pattern Image Note
TS27: cerebral cortex Present R3722-21 , R3722-22
TS27: hippocampus Present R3722-21 , R3722-22
TS27: main olfactory bulb Present R3722-21 , R3722-22
TS27: midbrain Present R3722-21 , R3722-22
TS27: olfactory epithelium Present R3722-21 , R3722-22
TS27: retina Present R3722-21 , R3722-22
TS27: trigeminal ganglion Present R3722-21 , R3722-22
TS27: corpus striatum Ambiguous R3722-21 , R3722-22 Authors indicate that there was either ubiquitous or background expression.
TS27: hindbrain Ambiguous R3722-21 , R3722-22 Authors indicate that there was either ubiquitous or background expression.
TS27: hypothalamus Ambiguous R3722-21 , R3722-22 Authors indicate that there was either ubiquitous or background expression.
TS27: thalamus Ambiguous R3722-21 , R3722-22 Authors indicate that there was either ubiquitous or background expression.
TS27: spinal cord Absent R3722-21 , R3722-22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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