Gene Expression Data
Assay Details
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Assay
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Reference:
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J:103446
McKee AE, et al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol. 2005 Jul 20;5:14
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:3617161
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Gene symbol:
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Trmt2a
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Gene name:
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TRM2 tRNA methyltransferase 2A
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Probe:
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Htf9c cDNA2
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Assay notes:
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The results of this assay were listed in Additional File 3, row Htf9c.
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Results
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Specimen
E13.5:
embryonic day 13.5
(more  )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Specimen
E13.5:
(close  )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Cryosection
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Note:
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Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
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Specimen
P0:
postnatal day 0
(more )
Note: Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
Specimen
P0:
(close )
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Genetic Background:
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Not Specified
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Age:
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postnatal day 0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Cryosection
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Note:
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Authors indicate that there was either ubiquitous expression that is difficult to distinguish from background, or no expression. The authors observed uneven signals in different brain regions and annotated some structures as "Present".
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| Structure |
Level |
Pattern |
Image |
Note |
| TS27: cerebral cortex |
Present |
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R2961-22
,
R2961-21
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| TS27: hippocampus |
Present |
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R2961-22
,
R2961-21
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| TS27: hypothalamus |
Ambiguous |
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R2961-21
,
R2961-22
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Authors indicate that there was either ubiquitous or background expression.
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| TS27: olfactory epithelium |
Ambiguous |
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R2961-21
,
R2961-22
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Authors indicate that there was either ubiquitous or background expression.
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| TS27: retina |
Ambiguous |
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R2961-21
,
R2961-22
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Authors indicate that there was either ubiquitous or background expression.
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| TS27: thalamus |
Ambiguous |
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R2961-21
,
R2961-22
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Authors indicate that there was either ubiquitous or background expression.
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| TS27: corpus striatum |
Absent |
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R2961-21
,
R2961-22
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| TS27: hindbrain |
Absent |
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R2961-21
,
R2961-22
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| TS27: main olfactory bulb |
Absent |
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R2961-21
,
R2961-22
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| TS27: midbrain |
Absent |
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R2961-21
,
R2961-22
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| TS27: spinal cord |
Absent |
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R2961-21
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R2961-22
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| TS27: trigeminal ganglion |
Absent |
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R2961-21
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R2961-22
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Analysis Tools