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Gene Expression Data
Assay Details
Assay
Reference: J:91213 Elms P, et al., Overlapping and distinct expression domains of Zic2 and Zic3 during mouse gastrulation. Gene Expr Patterns. 2004 Sep;4(5):505-11
Assay type: RNA in situ
MGI Accession ID: MGI:3526650
Gene symbol: Zic3
Gene name: zinc finger protein of the cerebellum 3
Probe: Zic3 cDNA3
Probe preparation: Antisense RNA
Results
Specimen 2A: embryonic day 5.0 (more )
Note: Pre-streak embryo.
Structure Level Pattern Image Note
TS7: extraembryonic component Present Regionally restricted 2A Expression is throughout the extra-embryonic ectoderm.
TS7: epiblast Present Single cells 2A
Specimen 2B: embryonic day 6.0 (more )
Structure Level Pattern Image Note
TS8: epiblast Present Regionally restricted 2B Expression is absent in the most distal epiblast cells.
TS8: embryo endoderm Absent 2B
Specimen 2C: embryonic day 6.0 (more )
Structure Level Pattern Image Note
TS8: epiblast Present Regionally restricted 2C Expression is absent in the most distal epiblast cells.
TS8: embryo endoderm Absent 2C
Specimen 2D: embryonic day 6.0 (more )
Structure Level Pattern Image Note
TS8: epiblast Present Regionally restricted 2D Expression is absent in the most distal epiblast cells.
TS8: embryo endoderm Absent 2D
Specimen 2E: embryonic day 6.0 (more )
Structure Level Pattern Image Note
TS8: epiblast Present Regionally restricted 2E Expression is absent in the most distal epiblast cells.
TS8: embryo endoderm Absent 2E
Specimen 2F: embryonic day 6.25 (more )
Structure Level Pattern Image Note
TS9: embryo Present Regionally restricted 2F Expression is absent in the most distal epiblast cells.
TS9: embryo endoderm Absent 2F
Specimen 2G: embryonic day 6.75 (more )
Note: Mid-streak embryo.
Structure Level Pattern Image Note
TS10: embryo ectoderm Weak Regionally restricted 2G Expression is in the anterior half.
TS10: embryo mesoderm Present Regionally restricted 2G Expression is encircling the embryonic portion of the egg cylinder.
TS10: extraembryonic mesoderm Absent 2G
TS10: amniotic fold ectoderm Present Regionally restricted 2G Expression is in the posterior aminotic folds.
Specimen 2H: embryonic day 7.0 (more )
Structure Level Pattern Image Note
TS10: definitive endoderm Present Regionally restricted 2H Expression is in the anterior definitive endoderm.
TS10: embryo ectoderm Present Regionally restricted 2H Expression is in the ectoderm at the anterior of the primitive streak.
TS10: node Absent 2H
Specimen 2I: embryonic day 7.0 (more )
Structure Level Pattern Image Note
TS10: embryo mesoderm Present 2I
TS10: primitive streak Present 2I
TS10: embryo ectoderm Present Regionally restricted 2I Expression is in ectoderm that is adjacent to expressing mesoderm.
TS10: node Absent 2I
Specimen 2J: embryonic day 7.25 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present 2J
TS11: primitive streak Present 2J
TS11: embryo ectoderm Present Regionally restricted 2J Expression is in ectoderm that is adjacent to expressing mesoderm.
TS11: node Absent 2J
Specimen 2K: embryonic day 7.75 (more )
Structure Level Pattern Image Note
TS12: lateral plate mesoderm Present 2K
TS12: primitive streak Present 2K
TS12: embryo ectoderm Present Regionally restricted 2K Expression is in ectoderm that is adjacent to expressing mesoderm.
Specimen 2L: embryonic day 7.5 (more )
Note: Head fold stage embryo. Flat mount.
Structure Level Pattern Image Note
TS11: future spinal cord neural plate Present Regionally restricted 2L Expression is absent in the midline neuroectoderm cells along the length of the axis, but is present in the rest of the neural plate.
Specimen 2M: embryonic day 7.5 (more )
Note: Head fold stage embryo.
Structure Level Pattern Image Note
TS11: node Present 2M
Specimen 2N: embryonic day 8.0 (more )
Note: 7-somite embryo.
Structure Level Pattern Image Note
TS12: future midbrain Weak 2N
TS12: future hindbrain Weak Regionally restricted 2N Expression is down-regulated in prospective rhombomere 3.
TS12: primitive streak Present Regionally restricted 2N Expression is in the node.
Specimen 2O: embryonic day 8.0 (more )
Note: 7-somite embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present Regionally restricted 2O Expression is in the node.
Specimen 2P: embryonic day 6.75 (more )
Structure Level Pattern Image Note
TS10: definitive endoderm Present Regionally restricted 2P Expression is in the anterior definitive endoderm.
Specimen 2Q: embryonic day 8.0 (more )
Note: 1-somite embryo.
Structure Level Pattern Image Note
TS12: future spinal cord neural plate Present Regionally restricted 2Q Expression is absent in the midline neuroectoderm cells along the length of the axis, but is present in the rest of the neural plate.
Specimen 2R: embryonic day 8.0 (more )
Note: 7-somite embryo.
Structure Level Pattern Image Note
TS12: primitive streak Present Regionally restricted 2R Expression is in the node.
TS12: trunk paraxial mesenchyme Present Regionally restricted 2R Expression is at the level of the node,
TS12: trunk unsegmented mesenchyme Present 2R
Specimen 2S: embryonic day 8.0 (more )
Note: 7-somite embryo.
Structure Level Pattern Image Note
TS12: trunk paraxial mesenchyme Present Regionally restricted 2S Expression is at the level of the node.
TS12: trunk unsegmented mesenchyme Present 2S
Specimen Not Shown: embryonic day 8.5 (more )
Note: 12-somites.
Structure Level Pattern Image Note
TS13: primitive streak Present Regionally restricted Expression is in the node.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory