About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:92054 Taglialatela P, et al., Compromised generation of GABAergic interneurons in the brains of Vax1-/- mice. Development. 2004 Sep;131(17):4239-49
Assay type: RNA in situ
MGI Accession ID: MGI:3487225
Gene symbol: Vax1
Gene name: ventral anterior homeobox 1
Probe: Vax1 probe2
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Graded 1A Expression is in the lateral ganglionic eminence, the medial ganglionic eminence, the septal area and the post-optic area. There is a strong downregulation at the corticostriatal boundary. Expression is low on the ventricular side.
TS20: lateral ganglionic eminence Present 1A
TS20: medial ganglionic eminence Present 1A
TS20: telencephalon mantle layer Absent 1A
Specimen 1B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Graded 1B Expression is in the lateral ganglionic eminence, the medial ganglionic eminence, the septal area and the post-optic area. Expression is low on the ventricular side.
TS20: lateral ganglionic eminence Present 1B
TS20: medial ganglionic eminence Present 1B
TS20: telencephalon mantle layer Absent 1B
Specimen 1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Graded 1C Expression is in the lateral ganglionic eminence, the medial ganglionic eminence, the septal area and the post-optic area. Expression is low on the ventricular side.
TS20: lateral ganglionic eminence Present 1C
TS20: medial ganglionic eminence Present 1C
TS20: telencephalon mantle layer Absent 1C
Specimen 1D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Graded 1D Expression is in the lateral ganglionic eminence, the medial ganglionic eminence, the septal area and the post-optic area. Expression is low on the ventricular side.
TS20: lateral ganglionic eminence Present 1D
TS20: medial ganglionic eminence Present 1D
TS20: telencephalon mantle layer Absent 1D
Specimen 1F,H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Graded 1F , 1H Expression is in the lateral ganglionic eminence, the medial ganglionic eminence, the septal area and the post-optic area. Expression is low on the ventricular side.
TS20: lateral ganglionic eminence Present 1F , 1H
TS20: medial ganglionic eminence Present 1F , 1H
TS20: telencephalon mantle layer Absent 1F
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory