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Gene Expression Data
Assay Details
Assay
Reference: J:23775 Oliver G, et al., Homeobox genes and connective tissue patterning. Development. 1995 Mar;121(3):693-705
Assay type: RNA in situ
MGI Accession ID: MGI:2148798
Gene symbol: Six2
Gene name: sine oculis-related homeobox 2
Probe: Six2 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 8A: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present Regionally restricted 8A First identified expression; expressed in a restricted mesodermal cell population at the anterior hindbrain level.

Specimen 9A: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: foregut diverticulum mesenchyme Present Regionally restricted 9A Expression over the very anterior foregut region.

Specimen 8B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: head mesenchyme Present Regionally restricted 8B Prominent in frontal region; restricted rostral boundary; broad band extending caudally from hindbrain to cervical spinal cord.
TS15: 1st branchial arch Present Regionally restricted 8B Expression in cells invading the medial part of arches.
TS15: 2nd branchial arch Present Regionally restricted 8B Expression in cells invading the medial part of arches.
TS15: esophageal region mesenchyme Present 8B Expression in pharyngeal-oesophageal mesenchyme.
TS15: pharynx mesenchyme Present 8B Expression in pharyngeal-oesophageal mesenchyme.
TS15: mesenchyme derived from splanchnopleure Present Regionally restricted 8B Expression in a restricted area of midgut mesenchyme.
TS15: midgut mesenchyme Present Regionally restricted 8B Expression in a restricted area of midgut mesenchyme.

Specimen 9B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: esophageal region mesenchyme Present Regionally restricted 9B Expression in the anterior oesophageal region.

Specimen 11A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: midgut mesenchyme Present Regionally restricted 11A Expression in a narrow and anterioposterior limited region of the midgut mesoderm.
TS15: midgut epithelium Absent 11A

Specimen 8C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted 8C Expression in developing cervical nephrotomes; also in surrounding mesenchymal cells.
TS17: mesonephros Present 8C
TS17: mesonephros mesenchyme Present 8C
TS17: nephrogenic cord Present 8C

Specimen 9C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: esophagus mesenchyme Strong 9C Strong expression in most of mesenchyme of the pharyngeal-oesophageal region.
TS17: pharynx mesenchyme Strong 9C Strong expression in most of mesenchyme of the pharyngeal-oesophageal region.
TS17: esophagus epithelium Absent 9C No expression in endodermally-derived parts of the tube.
TS17: pharynx epithelium Absent 9C No expression in endodermally-derived parts of the tube.

Specimen 10A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial arch Present Regionally restricted 10A Expression in a medial string of cells invading the 1st and 2nd branchial arches; also in a small region of 1st arch ectoderm, between mandibular and maxillary swellings.
TS17: 2nd branchial arch Present Regionally restricted 10A Expression in a medial string of cells invading the 1st and 2nd branchial arches; also in a small region of 1st arch ectoderm, between mandibular and maxillary swellings.

Specimen 10B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindbrain Present Regionally restricted 10B Expression in a small area of neuroectoderm in the anterior hindbrain (corresponds to myelencephalon).
TS17: head mesenchyme Present 10B

Specimen 12A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: nephrogenic cord Present Regionally restricted 12A Expression in mesenchyme of posterior nephrogenic cords.

Specimen 8D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: head mesenchyme Present Regionally restricted 8D Expression in a band of cervical mesodermal cells.
TS19: trunk somite Present Regionally restricted 8D Expression extends further into ventro-lateral part of some thoracic somites.
TS19: mesonephros Present Regionally restricted 8D Expression localized to mesenchyme of mesonephric tubules.
TS19: genital tubercle Present Regionally restricted 8D Expression in mesenchyme of genital eminence.
TS19: forelimb bud Present Regionally restricted 8D Expression in forelimb mesenchyme.

Specimen 12B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: mesonephros Present Regionally restricted 12B Expression in mesonephric tubules.
TS19: genital tubercle Present 12B

Specimen 7A' (whole mount): embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: handplate Present Regionally restricted 7A' (wm) Narrow band of expression along anterior margin, extending distally.

Specimen 7A' (section): embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: handplate Present Regionally restricted 7A' (sxn) Stronger expression ventrally than dorsally.

Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindlimb bud Present Authors report that expression in the hindlimb is similar, but a few hours delayed.

Specimen 7B' (whole mount): embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hand Present Regionally restricted 7B' (wm) Expression expands posteriorly; approximately the same anteroposterior domain as Six1; outlines the shapes of digits.

Specimen 8E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hand Present Regionally restricted 8E Expression expands posteriorly; approximately the same anteroposterior domain as Six1; outlines the shapes of digits.

Specimen 7B' (section): embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hand Present Regionally restricted 7B' (sxn) Authors report that expression remains stronger ventrally.

Specimen 9D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: esophagus mesenchyme Present Regionally restricted 9D Expression in oesophageal region limited to regions of supporting smooth muscles and connective tissue. Expression starts to fade; remaining expression in restricted mesenchymal cell population.

Specimen 11B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midgut mesenchyme Present Regionally restricted 11B Expression in region of midgut mesenchyme corresponding to the gastric-duodenal area; may correspond to the pyloric stomach.

Specimen 12C: embryonic day 12.5 (more )
Note: In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
Structure Level Pattern Image Note
TS20: metanephros Present Regionally restricted 12C Expression over undifferentiated mesenchymal part of metanephros surrounding the urethric buds; not in urethric buds.

Specimen 7C' (whole mount): embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hand Present Regionally restricted 7C' (wm) Expression flanking digit cartilage condensations.

Specimen 7C' (section): embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hand Present Regionally restricted 7C' (sxn) Expression flanking digit cartilage condensations.

Specimen 12E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: genital tubercle Present Regionally restricted 12E Very localized expression over genital tubercle mesenchyme.

Specimen 7D' (whole mount): embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hand Present Regionally restricted 7D' (wm) Expression pattern complementary to Six1.

Specimen 7D' (section): embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hand Present Regionally restricted 7D' (sxn) Expression is mainly ventral (strong) but also dorsal (weak) to phalangeal elements of the digits.

Specimen 13A/B: embryonic day 15.5 (more )
Note: In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
Structure Level Pattern Image Note
TS23: head mesenchyme Present Regionally restricted 13A/B Expression over some of head membrane bones, mostly derived from neural crest; weak expression in a few head muscles.

Specimen not shown: embryonic day 16.0 (more )
Structure Level Pattern Image Note
TS24: esophagus Weak Expression largely diminished in the oesophagus, stomach and kidney.
TS24: metanephros Weak Expression largely diminished in the oesophagus, stomach and kidney.
TS24: stomach Weak Expression largely diminished in the oesophagus, stomach and kidney.


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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory