Gene Expression Data
Assay Details
Assay
|
Reference:
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J:23775
Oliver G, et al., Homeobox genes and connective tissue patterning. Development. 1995 Mar;121(3):693-705
|
Assay type:
|
RNA in situ
|
MGI Accession ID:
|
MGI:2148798
|
Gene symbol:
|
Six2
|
Gene name:
|
sine oculis-related homeobox 2
|
Probe:
|
Six2 cDNA1
|
Probe preparation:
|
Antisense labelled with digoxigenin RNA
|
Visualized with:
|
Alkaline phosphatase
|
|
Results
|
Specimen
8A:
embryonic day 8.5
(more )
Specimen
8A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS13: head mesenchyme |
Present |
Regionally restricted |
8A
|
First identified expression; expressed in a restricted mesodermal cell population at the anterior hindbrain level.
|
Specimen
9A:
embryonic day 8.5
(more )
Specimen
9A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
8B:
embryonic day 9.5
(more )
Specimen
8B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
9B:
embryonic day 9.5
(more )
Specimen
9B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
11A:
embryonic day 9.5
(more )
Specimen
11A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
8C:
embryonic day 10.5
(more )
Specimen
8C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
9C:
embryonic day 10.5
(more )
Specimen
9C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
10A:
embryonic day 10.5
(more )
Specimen
10A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 1st branchial arch |
Present |
Regionally restricted |
10A
|
Expression in a medial string of cells invading the 1st and 2nd branchial arches; also in a small region of 1st arch ectoderm, between mandibular and maxillary swellings.
|
TS17: 2nd branchial arch |
Present |
Regionally restricted |
10A
|
Expression in a medial string of cells invading the 1st and 2nd branchial arches; also in a small region of 1st arch ectoderm, between mandibular and maxillary swellings.
|
Specimen
10B:
embryonic day 10.5
(more )
Specimen
10B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
Regionally restricted |
10B
|
Expression in a small area of neuroectoderm in the anterior hindbrain (corresponds to myelencephalon).
|
TS17: head mesenchyme |
Present |
|
10B
|
|
Specimen
12A:
embryonic day 10.5
(more )
Specimen
12A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: nephrogenic cord |
Present |
Regionally restricted |
12A
|
Expression in mesenchyme of posterior nephrogenic cords.
|
Specimen
8D:
embryonic day 11.5
(more )
Specimen
8D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: head mesenchyme |
Present |
Regionally restricted |
8D
|
Expression in a band of cervical mesodermal cells.
|
TS19: trunk somite |
Present |
Regionally restricted |
8D
|
Expression extends further into ventro-lateral part of some thoracic somites.
|
TS19: mesonephros |
Present |
Regionally restricted |
8D
|
Expression localized to mesenchyme of mesonephric tubules.
|
TS19: genital tubercle |
Present |
Regionally restricted |
8D
|
Expression in mesenchyme of genital eminence.
|
TS19: forelimb bud |
Present |
Regionally restricted |
8D
|
Expression in forelimb mesenchyme.
|
Specimen
12B:
embryonic day 11.5
(more )
Specimen
12B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
7A' (whole mount):
embryonic day 11.5
(more )
Specimen
7A' (whole mount):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: handplate |
Present |
Regionally restricted |
7A' (wm)
|
Narrow band of expression along anterior margin, extending distally.
|
Specimen
7A' (section):
embryonic day 11.5
(more )
Specimen
7A' (section):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: handplate |
Present |
Regionally restricted |
7A' (sxn)
|
Stronger expression ventrally than dorsally.
|
Specimen
not shown:
embryonic day 11.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
Not Specified
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: hindlimb bud |
Present |
|
|
Authors report that expression in the hindlimb is similar, but a few hours delayed.
|
Specimen
7B' (whole mount):
embryonic day 12.5
(more )
Specimen
7B' (whole mount):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hand |
Present |
Regionally restricted |
7B' (wm)
|
Expression expands posteriorly; approximately the same anteroposterior domain as Six1; outlines the shapes of digits.
|
Specimen
8E:
embryonic day 12.5
(more )
Specimen
8E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hand |
Present |
Regionally restricted |
8E
|
Expression expands posteriorly; approximately the same anteroposterior domain as Six1; outlines the shapes of digits.
|
Specimen
7B' (section):
embryonic day 12.5
(more )
Specimen
7B' (section):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hand |
Present |
Regionally restricted |
7B' (sxn)
|
Authors report that expression remains stronger ventrally.
|
Specimen
9D:
embryonic day 12.5
(more )
Specimen
9D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: esophagus mesenchyme |
Present |
Regionally restricted |
9D
|
Expression in oesophageal region limited to regions of supporting smooth muscles and connective tissue. Expression starts to fade; remaining expression in restricted mesenchymal cell population.
|
Specimen
11B:
embryonic day 12.5
(more )
Specimen
11B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: midgut mesenchyme |
Present |
Regionally restricted |
11B
|
Expression in region of midgut mesenchyme corresponding to the gastric-duodenal area; may correspond to the pyloric stomach.
|
Specimen
12C:
embryonic day 12.5
(more )
Note: In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
Specimen
12C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Note:
|
In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: metanephros |
Present |
Regionally restricted |
12C
|
Expression over undifferentiated mesenchymal part of metanephros surrounding the urethric buds; not in urethric buds.
|
Specimen
7C' (whole mount):
embryonic day 13.5
(more )
Specimen
7C' (whole mount):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: hand |
Present |
Regionally restricted |
7C' (wm)
|
Expression flanking digit cartilage condensations.
|
Specimen
7C' (section):
embryonic day 13.5
(more )
Specimen
7C' (section):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: hand |
Present |
Regionally restricted |
7C' (sxn)
|
Expression flanking digit cartilage condensations.
|
Specimen
12E:
embryonic day 14.5
(more )
Specimen
12E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: genital tubercle |
Present |
Regionally restricted |
12E
|
Very localized expression over genital tubercle mesenchyme.
|
Specimen
7D' (whole mount):
embryonic day 14.5
(more )
Specimen
7D' (whole mount):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: hand |
Present |
Regionally restricted |
7D' (wm)
|
Expression pattern complementary to Six1.
|
Specimen
7D' (section):
embryonic day 14.5
(more )
Specimen
7D' (section):
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: hand |
Present |
Regionally restricted |
7D' (sxn)
|
Expression is mainly ventral (strong) but also dorsal (weak) to phalangeal elements of the digits.
|
Specimen
13A/B:
embryonic day 15.5
(more )
Note: In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
Specimen
13A/B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 15.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Note:
|
In some cases, in situ hybridization to paraffin sections was performed using radiolabeled probes.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: head mesenchyme |
Present |
Regionally restricted |
13A/B
|
Expression over some of head membrane bones, mostly derived from neural crest; weak expression in a few head muscles.
|
Specimen
not shown:
embryonic day 16.0
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.0
|
Sex:
|
Not Specified
|
Type:
|
Not Specified
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: esophagus |
Weak |
|
|
Expression largely diminished in the oesophagus, stomach and kidney.
|
TS24: metanephros |
Weak |
|
|
Expression largely diminished in the oesophagus, stomach and kidney.
|
TS24: stomach |
Weak |
|
|
Expression largely diminished in the oesophagus, stomach and kidney.
|
|