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Gene Expression Data
Assay Details
Assay
Reference: J:11610 Erselius JR, et al., Structure and expression pattern of the murine Hox-3.2 gene. Development. 1990 Oct;110(2):629-42
Assay type: RNA in situ
MGI Accession ID: MGI:2137216
Gene symbol: Hoxc9
Gene name: homeobox C9
Probe: probe 1
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 4A,4B: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: neural tube Present Regionally restricted 4A/B Anterior boundary is at the level of the third thoracic prevertebra; clearly restricted to the ventral part of the neural tube.
TS18: axial skeleton Weak 4A/B Expression in prevertebra and spinal ganglia is very weak.
TS18: spinal ganglion Weak 4A/B Expression in prevertebra and spinal ganglia is very weak.

Specimen 4C,4D: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: spinal ganglion Weak 4C/D Much lower expression than in the neural tube.
TS21: axial skeleton Present Regionally restricted 4C/D Anterior boundary of expression in prevertebra was difficult to define; approximately at the ninth thoracic vertebra (T9).

Specimen 4E,4F: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: spinal cord Present Regionally restricted 4E/F Restricted to posterior regions; sharp anterior boundary at the level of the third thoracic prevertebra (T3)

Specimen 5A,5B: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: allantois Present Regionally restricted 5A/B Expression at the base of the allantois.
TS14: future spinal cord neural plate Ambiguous 5A/B Little, if any, expression in cells of the neural plate.

Specimen 5C,5D: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: neural tube Present Regionally restricted 5C/D Anterior boundary is at the level of the third thoracic prevertebra; clearly restricted to the ventral part of the neural tube.
TS18: neural tube ventricular layer Absent 5C/D No expression in the ependymal layer.

Specimen 5E,5F: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: basal columns Present 5E/F Only in postmitotic cells, including the mantle layer, marginal layer and the ventral horns.
TS21: spinal cord mantle layer Present 5E/F Only in postmitotic cells, including the mantle layer, marginal layer and the ventral horns.
TS21: spinal cord marginal layer Present 5E/F Only in postmitotic cells, including the mantle layer, marginal layer and the ventral horns.
TS21: spinal cord ventricular layer Absent 5E/F No expression in the ependymal layer.

Specimen not shown: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: hindlimb Present Regionally restricted Expression in the proximal part of the hindlimb bud
TS21: metanephros Weak Regionally restricted Weak expression in the area where the metanephric tubules and metanephric ducts develop

Specimen not shown: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: spinal cord Present Regionally restricted Anterior boundary of expression at the level of the third thoracic prevertebra.

Specimen 5G,5H: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: intermediate grey horn Strong 5G/H
TS23: spinal cord marginal layer Strong 5G/H
TS23: spinal cord mantle layer Present 5G/H Expression in ventral horns was considerably reduced compared to the mantle layer.
TS23: ventral grey horn Present 5G/H Expression in ventral horns was considerably reduced compared to the mantle layer.
TS23: dorsal grey horn Absent 5G/H No expression in the ependymal layer or in dorsal horns
TS23: spinal cord ventricular layer Absent 5G/H No expression in the ependymal layer or in dorsal horns

Specimen 6A,6B: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: renal cortex Present 6A/B Expression mainly in the cortex.
TS23: metanephros Present Regionally restricted 6A/B Expression in mesenchyme is considerably reduced.
TS23: extraembryonic component Ambiguous 6A/B Strong expression, close to the kidney, could not be located unequivocally; appears to be either the ureter, part of the genital ridge, or the umbilical cord.
TS23: reproductive system Ambiguous 6A/B Strong expression, close to the kidney, could not be located unequivocally; appears to be either the ureter, part of the genital ridge, or the umbilical cord.
TS23: ureter Ambiguous 6A/B Strong expression, close to the kidney, could not be located unequivocally; appears to be either the ureter, part of the genital ridge, or the umbilical cord.

Specimen 6C,6D: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: renal cortex Present 6C/D Expression mainly in the cortex.
TS25: metanephros Present Regionally restricted 6C/D Expression in mesenchyme is considerably reduced.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory