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Gene Expression Data
Assay Details
Assay
Reference: J:32072 Ruberte E, et al., Retinoic acid receptors and cellular retinoid binding proteins. II. Their differential pattern of transcription during early morphogenesis in mouse embryos. Development. 1991 Jan;111(1):45-60
Assay type: RNA in situ
MGI Accession ID: MGI:1934380
Gene symbol: Rarb
Gene name: retinoic acid receptor, beta
Probe: RAR-beta-cDNA3
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1A: embryonic day 7.5-8.0 (more )
Note: Presomite stage.
Structure Level Pattern Image Note
TS11: embryo Present Regionally restricted 1A RAR-beta Well-defined labelling in specific regions. Lower expression in midline than in lateral regions.
TS11: embryo mesenchyme Present Regionally restricted 1A RAR-beta Expression is not clearly tissue-related, except in the most rostral area; present in mesenchyme but not in overlying neural epithelium.
TS11: neural ectoderm Present Regionally restricted 1A RAR-beta Expression is not clearly tissue-related, except in the most rostral area; present in mesenchyme but not in overlying neural epithelium.

Specimen 1B: embryonic day 7.5-8.0 (more )
Note: Presomite stage.
Structure Level Pattern Image Note
TS11: embryo Present Regionally restricted 1B RAR-beta Well-defined labelling in specific regions. Lower expression in midline than in lateral regions.

Specimen 2A: embryonic day 8.0 (more )
Note: 4 to 7 somites.
Structure Level Pattern Image Note
TS12: future midbrain Absent 2A RAR-beta
TS12: foregut diverticulum endoderm Present Regionally restricted 2A RAR-beta Transcripts were also found in foregut endoderm.

Specimen 2B: embryonic day 8.0 (more )
Note: 4 to 7 somites.
Structure Level Pattern Image Note
TS12: future hindbrain neural ectoderm Present Regionally restricted 2B RAR-beta Transcripts within neural epithelium restricted to caudal hindbrain levels.

Specimen not shown: embryonic day 8.0 (more )
Note: 4 to 7 somites.
Structure Level Pattern Image Note
TS12: embryo mesenchyme Present Regionally restricted Authors state that labelling in the mesoderm was regionally restricted.

Specimen 5A: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: neural ectoderm Present Regionally restricted 5A RAR-beta Expressed from just rostral to the first somite, extending caudally as far as the limit of neural tube closure.

Specimen 5B: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: foregut diverticulum endoderm Present 5B RAR-beta
TS13: neural ectoderm Present Regionally restricted 5B RAR-beta Expressed from just rostral to the first somite, extending caudally as far as the limit of neural tube closure.

Specimen 5C: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: foregut diverticulum endoderm Present 5C RAR-beta
TS13: sinus venosus Present 5C RAR-beta
TS13: neural ectoderm Present 5C RAR-beta Expressed from just rostral to the first somite, extending caudally as far as the limit of neural tube closure.

Specimen 5D: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: foregut diverticulum endoderm Present 5D RAR-beta
TS13: sinus venosus Present 5D RAR-beta
TS13: neural ectoderm Present Regionally restricted 5D RAR-beta Expressed from just rostral to the first somite, extending caudally as far as the limit of neural tube closure.
TS13: future spinal cord neural fold Absent 5D RAR-beta

Specimen not shown: embryonic day 8.5 (more )
Note: 8 to 10 somites.
Structure Level Pattern Image Note
TS13: lateral plate mesoderm Present
TS13: head somite Absent
TS13: trunk somite Absent

Specimen 6A: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: future hindbrain Present Regionally restricted 6A RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: neural tube Present Regionally restricted 6A RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: head mesenchyme Present Regionally restricted 6A RAR-beta Transcripts detected in frontonasal mesenchyme.

Specimen 6B: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: future hindbrain Present Regionally restricted 6B RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: neural tube Present Regionally restricted 6B RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: future spinal cord neural fold Absent 6B RAR-beta Not labelled in the open neural folds.
TS14: gut Present Regionally restricted 6B RAR-beta Transcripts detected in gut endoderm.
TS14: 1st branchial arch mandibular component ectoderm Present Regionally restricted 6B RAR-beta Transcripts extended into the medial part of the ectoderm-derived epithelial covering of the mandibular arch.

Specimen 6C: embryonic day 9.0 (more )
Note: 12 to 14 somites.
Structure Level Pattern Image Note
TS14: future hindbrain Present Regionally restricted 6C RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: neural tube Present Regionally restricted 6C RAR-beta Trancripts in caudal hindbrain, extending caudally into the trunk neural tube as far as the caudal neuropore.
TS14: mesenchyme derived from splanchnopleure Present Regionally restricted 6C RAR-beta Transcripts present in splanchnopleuric mesoderm of the upper trunk.
TS14: trunk somite Absent 6C RAR-beta

Specimen 8A: embryonic day 9.0 (more )
Note: 18 to 20 somites.
Structure Level Pattern Image Note
TS14: embryo Present Regionally restricted 8A RAR-beta Authors state that the pattern of expression was not very different from that seen previously.
TS14: head mesenchyme derived from neural crest Present 8A RAR-beta Higher levels of transcripts in neural crest-derived cells.
TS14: mesenchyme derived from head mesoderm Present 8A RAR-beta Higher levels of transcripts in neural crest-derived cells.
TS14: head mesenchyme Present Regionally restricted 8A RAR-beta Expression in a ring of frontonasal mesenchyme around the forebrain vesicle.
TS14: future hindbrain Present Regionally restricted 8A RAR-beta Rostral limit in hindbrain neuroepithelium corresponds to the rhombomere 6/7 boundary, just caudal to otic vesicles.
TS14: neural tube Present Regionally restricted 8A RAR-beta Expression extends along the whole length of the closed region of the neural tube.
TS14: 1st branchial arch mandibular component mesenchyme Absent 8A RAR-beta
TS14: gut Present Regionally restricted 8A RAR-beta Transcripts were found in gut endoderm.
TS14: trunk somite Absent 8A RAR-beta

Specimen not shown: embryonic day 9.0 (more )
Note: 18 to 20 somites.
Structure Level Pattern Image Note
TS14: otic pit epithelium Absent
TS14: intermediate mesenchyme Present
TS14: mesenchyme derived from lateral plate Present
TS14: limb Present Regionally restricted Transcripts in the most proximal mesenchyme of the developing limbs.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory