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Gene Expression Data
Assay Details
Assay
Reference: J:30750 Gaunt SJ, et al., Spatially restricted domains of homeo-gene transcripts in mouse embryos: relation to a segmented body plan. Development. 1988;104(Suppl):169-79
Assay type: RNA in situ
MGI Accession ID: MGI:1344203
Gene symbol: Hoxa4
Gene name: homeobox A4
Probe: Hoxa4 probe2
Probe preparation: Antisense labelled with S35 RNA
Results
Specimen 3A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vertebral cartilage condensation Present Graded 3A Labeling markedly declined over the first four thoracic vertebrae (pv8-11). Labelling intensity continued to decline progressively but remained above background until pv18. Anterior parts of thoracic vertebrae were labelled more intensely than posterior.

Specimen 4B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thyroid gland Present 4A/B
TS20: pharynx Absent 4A/B Transcripts were not present generally in tissues that formed the floor of the pharynx. Transcripts were not detectable anterior to the thyroid duct.
TS20: trachea Strong 4A/B
TS20: lung Strong Regionally restricted 4A/B Labelling was restricted to mesodermal components and did not include the endodermally derived lung epithelium.

Specimen Table 1: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: heart Present Regionally restricted Transcripts were detected both within the walls of the aortic trunk and within a small patch of tissue restricted to the base of the heart.
TS20: outflow tract aortic component Present Regionally restricted Transcripts were detected within the walls of the aortic trunk.
TS20: pharynx Absent Expression was not detected in ventral pharynx.
TS20: lung Present
TS20: mesonephros Present
TS20: metanephros Present
TS20: thyroid gland Present
TS20: trachea Present
TS20: stomach Present Transcripts were restricted to the mesodermal components.
TS20: stomach epithelium Absent

Specimen 6B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: central nervous system Present Regionally restricted 6B The anterior boundary lay about midway along the floor of the myelencephalon. The bounday is irregular in shape along the dorsoventral axis of the nervous tissue. These irregularities have been found to be consistent among different embryos.
TS20: medulla oblongata floor plate Present Regionally restricted 6B The anterior boundary lay about midway along the floor of the myelencephalon. The bounday is irregular in shape along the dorsoventral axis of the nervous tissue. These irregularities have been found to be consistent among different embryos.

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord Present Graded A progressive anterior-to-posterior fall in abundance of transcripts was observed.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory