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Gene Expression Data
Assay Details
Assay
Reference: J:10731 Gaunt SJ, et al., Mouse Hox-3.4: homeobox sequence and embryonic expression patterns compared with other members of the Hox gene network. Development. 1990 Jun;109(2):329-39
Assay type: RNA in situ
MGI Accession ID: MGI:1341315
Gene symbol: Hoxc5
Gene name: homeobox C5
Probe: Hox2.1 Probe
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Assay notes: Identical results were obtained using the probe MGI:1341314.
Results
Specimen 4B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung Weak 4B
TS20: spinal cord Weak Uniform 4B
TS20: brain Absent 4B Expression was not detected anterior to the hindbrain boundary.
TS20: central nervous system Present Regionally restricted 4B Expression is caudal to a boundary in the posterior myelencephalon.

Specimen 5B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord mantle layer Strong Regionally restricted 5B Expression is in both central and ventral regions.

Specimen 6B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: C1 vertebral cartilage condensation Absent 6B
TS20: C2 vertebral cartilage condensation Absent 6B
TS20: C3 vertebral cartilage condensation Absent 6B
TS20: C4 vertebral cartilage condensation Absent 6B
TS20: C5 vertebral cartilage condensation Weak 6B Low levels of transcripts in ventral parts of prevertebra 5 in some sections.
TS20: C6 vertebral cartilage condensation Present 6B
TS20: C7 vertebral cartilage condensation Present 6B
TS20: T1 vertebral cartilage condensation Strong 6B
TS20: T2 vertebral cartilage condensation Strong 6B
TS20: T3 vertebral cartilage condensation Strong 6B
TS20: T4 vertebral cartilage condensation Strong 6B
TS20: T5 vertebral cartilage condensation Strong 6B
TS20: T6 vertebral cartilage condensation Strong 6B
TS20: T7 vertebral cartilage condensation Strong 6B
TS20: T10 vertebral cartilage condensation Present 6B
TS20: T8 vertebral cartilage condensation Present 6B
TS20: T9 vertebral cartilage condensation Present 6B
TS20: L1 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: L2 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: L3 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: L4 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: L5 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: L6 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: S1 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: S2 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: S3 vertebral pre-cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: S4 vertebral pre-cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: T11 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: T12 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.
TS20: T13 vertebral cartilage condensation Weak 6B Low levels of labeling in all prevertebrae posterior to prevertebra 17.

Specimen 8B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung Weak Regionally restricted 8B Expression is confined to the outer mesodermal component.
TS20: trachea Trace 8B
TS20: esophagus epithelium Present 8B

Specimen 9B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: stomach epithelium Present Regionally restricted 9B Expression is in the anterior part of the stomach.
TS20: stomach mesenchyme Present 9B
TS20: stomach Present Regionally restricted 9B Expression is in the dorsal but not the ventral parts of the stomach wall.
TS20: mesonephros Strong 9B
TS20: metanephros Strong 9B
TS20: testis Present Regionally restricted 9B There is no expression in the testis cord.

Specimen 10B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: gut Present Regionally restricted 10B Expression is in the mesodermal components of the posterior part of the gut in some but not all loops.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory