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Genes & Genome Features

Genes & Markers

Using the Genes and Markers Query Form

Interpreting a Genes and Markers Summary

Interpreting Gene Details

Genome Feature Type Definitions

Interpreting Experimental Mapping Data Records

Sequences

Interpreting a Sequence Summary

Interpreting Sequence Details

Using the Multiple Genome Viewer

Phenotypes, Alleles, & and Disease Models

Phenotypes & Alleles

Using the Phenotypes, Alleles, and Disease Models Query Form

Selecting Phenotypic Allele Categories

Interpreting a Phenotypic Allele Summary

Interpreting Phenotypic Allele Details

Interpreting the Phenotype Summary in Allele Details

Interpreting All Images for an Allele

Interpreting (Phenotypic) Image Details

Interpreting All Phenotype Images for a Gene

Using the Phenotypes Selection List

Diseases

Interpreting Human Disease and Mouse Model Details

Using the Human - Mouse: Disease Connection

Human - Mouse: Disease Connection (HMDC) Search Examples

Gene Expression

Using the Gene Expression Data Query Form

Using the Differential Expression Search

Using the Expression Profile Search

Using the Gene Expression Batch Search

Using the Gene Expression Literature Query Form

Interpreting Gene Expression Data and Image Details

Interpreting the Gene Expression Data: Results by Tissue Summary

Using the Gene Expression + Phenotype Comparison Matrix

Using the Mouse Developmental Anatomy Browser

Using the Adult Mouse Anatomical Dictionary Browser

Using the RNA-Seq and Microarray Experiment Search

Molecular Reagents

Interpreting a cDNA Clone Source Data Summary

Interpreting a Probe and Clone Data Summary

Interpreting Probe and Primer Details

Interpreting a Microarray Probeset Summary

Interpreting Antibody Details

Recombinases

Using the Recombinase Activity Search

Interpreting a Recombinase Alleles Tissue Specificity Summary

Interpreting Recombinase Specificity Details

Using the Gene Expression + Recombinase Activity Comparison Matrix

GO Functional Annotations

Using Gene Ontology Classification Fields on MGI Query Forms

Interpreting the Gene Ontology Classifications Report

Vertebrate Homology

Interpreting Vertebrate Homology Class Reports

Strains, SNPs & Polymorphisms

Strains

Using the Strain Search

Interpreting a Strain Summary

Interpreting Strain Details

SNPs

Using the Mouse SNP Query Form

Interpreting a Mouse SNP Summary

Interpreting SNP Details

Understanding Mouse SNP Coordinate Discrepancies

Interpreting the MGI Mouse SNPs Results Table

SNP Terms and Concepts

My SNP query returned no results. Why?

Interpreting Polymorphism Results

Other Searches

Quick Search

Using the Quick Search Tool

Quick Search Examples and Questions

References

Using the Reference Query Form

Batch Querying / Interpreting Results

Using the MGI Batch Query

Using the MouseMine Data Warehouse

Using & Interpreting Accession IDs

Querying by Accession ID - Results and Examples

Gene Trap Help

Gene Trap Questions and Answers

Query Form Usage Help

Using MGI Query Forms

General Guidelines for MGI Query Form Searches

Full-Text Searching on MGI Query Forms

Using Wild Cards on MGI Query Forms

Using Map Position Fields on MGI Query Forms

Using Gene Ontology Classification Fields on MGI Query Forms

Vocabularies

Using the Gene Ontology (GO) Browser

Interpreting the Gene Ontology Classifications Report

Using the Human Disease Ontology (DO) Browser

Using the Mammalian Phenotype (MP) Browser

Using the Human Phenotype Ontology (HPO) Browser

Using the Mouse Developmental Anatomy Browser

Using the Adult Mouse Anatomical Dictionary Browser

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