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Table pub.mgd.seq_marker_cache
A record in this table represents the cached value of the annotation between a mouse Marker and a Sequence. See seqcacheload/seqmarker.csh.

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Primary key columns
Columns with indexes
Implied relationships
Excluded column relationships
< n > number of related tables
Column Type Size Nulls Auto Default Children Parents Comments
_cache_key int4 10
all_cre_cache._cache_key Implied Constraint R
mrk_do_cache._cache_key Implied Constraint R
primary key
_sequence_key int4 10
seq_sequence._sequence_key seq_marker_cache__sequence_key_fkey C
foreign key to SEQ_Sequence
_marker_key int4 10
mrk_marker._marker_key seq_marker_cache__marker_key_fkey C
foreign key to MRK_Marker
_organism_key int4 10
mgi_organism._organism_key seq_marker_cache__organism_key_fkey R
foreign key to MGI_Organism
_refs_key int4 10
bib_refs._refs_key seq_marker_cache__refs_key_fkey C
foreign key to BIB_Refs
_qualifier_key int4 10
voc_term._term_key seq_marker_cache__qualifier_key_fkey C
foreign key to VOC_Term where _Vocab_key =289 (Representative Sequence Qualifier); qualifies the association between the Marker and the Sequence
_sequenceprovider_key int4 10
voc_term._term_key seq_marker_cache__sequenceprovider_key_fkey C
foreign key to VOC_Term where _Vocab_key = 25 (Sequence Provider)
_sequencetype_key int4 10
voc_term._term_key seq_marker_cache__sequencetype_key_fkey C
foreign key to VOC_Term where _Vocab_key = 21 (Sequence Type)
_logicaldb_key int4 10 foreign key to ACC_LogicalDB
_marker_type_key int4 10
mrk_types._marker_type_key seq_marker_cache__marker_type_key_fkey R
foreign key to MRK_Types
_biotypeconflict_key int4 10
voc_term._term_key seq_marker_cache__biotypeconflict_key_fkey C
foreign key to VOC_Term where _Vocab_key = 76 (BioType Conflict); 'Conflict', 'Not Applicable'
accid varchar 30 accession id of the Sequence
rawbiotype text 2147483647  √  null raw biotype
annotation_date timestamp 29,6 now() date of the annotation
_createdby_key int4 10 1001
mgi_user._user_key seq_marker_cache__createdby_key_fkey R
user who created the record
_modifiedby_key int4 10 1001
mgi_user._user_key seq_marker_cache__modifiedby_key_fkey R
user who last modified the record
creation_date timestamp 29,6 now() date record was created
modification_date timestamp 29,6 now() date record was last modified

Table contained 2,529,411 rows at Mon Sep 11 06:12 EDT 2023

Column(s) Type Sort Constraint Name
_cache_key Primary key, Used to cluster data Asc seq_marker_cache_pkey
accid Performance Asc seq_marker_cache_idx_accid
annotation_date Performance Asc seq_marker_cache_idx_annotation_date
_biotypeconflict_key Performance Asc seq_marker_cache_idx_biotypeconflict_key
_sequence_key + _marker_key + _refs_key Performance Asc/Asc/Asc seq_marker_cache_idx_clustered
_logicaldb_key Performance Asc seq_marker_cache_idx_logicaldb_key
_marker_key + _sequence_key Performance Asc/Asc seq_marker_cache_idx_marker_key
_marker_type_key Performance Asc seq_marker_cache_idx_marker_type_key
_organism_key Performance Asc seq_marker_cache_idx_organism_key
_qualifier_key Performance Asc seq_marker_cache_idx_qualifier_key
_refs_key Performance Asc seq_marker_cache_idx_refs_key
_sequenceprovider_key Performance Asc seq_marker_cache_idx_sequenceprovider_key
_sequencetype_key Performance Asc seq_marker_cache_idx_sequencetype_key

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