rs52512989 SNP Detail

Summary

• ID
  rs52512989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133480566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGTTC AATGTGTATG
  TTATCTGTGA AGGTATAGTT CAAATGAAAT TTCCTAAATT TGCAGAGCAG GGAGGAGTTG
  TATGTGCCAG GAGTAGACAA TTGCTTATTT CTTGCTATGT AGCATTCTCT CATCGTCTCT
  AAAGAAAGGT TTCCTTTTCC CATGTTTCTT TAAACAAAAC ACCCACATCT TTACTACAGT
  R
  CAGGCAAACT TTCACATACA TAAGGTAAAC AATAAATATG TTTATATATA TATATAAACA
  CACACCCATA TATAAAACAC ATATATAAAC ATACCTCACA TAAAATATAT TATACATATA
  TACCTATGCA CATATATATA CATATATGTA TATATATGTA TATATATATA TGAAACAATC
  CCCACAACTA AGGTAATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084043	NES16592052	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52512989					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084043	NES16592052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133480566 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	1291 bp proximal